Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 8.0e-127 457.2 250 100.0
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 7.1e-67 258.1 299 54.2
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 3.0e-65 252.7 298 54.0
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 4.3e-56 222.2 276 53.3
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 3.9e-33 146.0 268 39.2
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 4.1e-30 136.0 284 35.9
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.2e-29 134.4 254 38.6
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 4.5e-29 132.5 286 38.8
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.2e-28 130.2 254 38.2
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 6.5e-28 128.6 275 41.1
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.1e-27 127.9 237 40.1
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 5.5e-27 125.6 232 38.4
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.7e-26 122.5 291 34.7
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 6.1e-26 122.1 253 41.1
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.0e-25 121.3 248 38.7
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.4e-25 120.9 221 39.8
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.0e-25 119.8 280 33.2
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 8.8e-25 118.2 223 38.6
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.5e-24 117.5 261 36.8
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.3e-24 116.3 293 33.1
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 5.7e-24 115.5 255 42.0
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 5.7e-24 115.5 243 35.4
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 5.7e-24 115.5 236 38.1
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 7.5e-24 115.2 258 36.4
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 7.5e-24 115.2 281 40.6
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.8e-23 112.5 259 35.1
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 6.3e-23 112.1 238 38.7
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.4e-22 110.9 228 37.7
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 2.4e-22 110.2 297 34.0
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 3.1e-22 109.8 239 40.2
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 4.1e-22 109.4 222 37.4
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 9.1e-22 108.2 242 36.8
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.2e-21 107.8 323 32.8
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.2e-21 107.8 277 31.4
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.0e-21 107.1 234 35.5
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 4.5e-21 105.9 262 32.8
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 6.5e-20 102.1 309 31.1
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 6.5e-20 102.1 103 55.3
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 6.5e-20 102.1 253 32.0
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 6.5e-20 102.1 89 62.9
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.1e-19 101.3 263 36.1
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.5e-19 100.9 263 33.1
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.9e-19 100.5 315 30.5
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.9e-19 100.5 264 34.1
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.5e-19 100.1 239 35.6
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 4.2e-19 99.4 247 37.2
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 7.2e-19 98.6 311 31.8
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 7.2e-19 98.6 261 34.9
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.2e-18 97.8 98 52.0
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.6e-18 97.4 237 38.4
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.7e-18 96.7 271 31.7
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.7e-18 96.7 260 33.1
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.7e-18 96.7 271 30.6
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 4.7e-18 95.9 262 33.6
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 4.7e-18 95.9 104 55.8
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.1e-18 95.5 102 52.0
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 6.1e-18 95.5 237 39.2
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 8.0e-18 95.1 243 34.2
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.0e-17 94.7 238 35.3
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.0e-17 94.7 253 32.8
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.8e-17 94.0 103 52.4
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 2.3e-17 93.6 94 60.6
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 3.0e-17 93.2 230 34.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 4.0e-17 92.8 270 30.7
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 5.2e-17 92.4 258 33.7
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 6.8e-17 92.0 236 36.4
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 6.8e-17 92.0 244 33.6
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 6.8e-17 92.0 281 31.0
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 8.8e-17 91.7 277 33.9
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 2.0e-16 90.5 88 59.1
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.6e-16 90.1 283 30.7
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 3.4e-16 89.7 264 33.7
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 3.4e-16 89.7 182 37.4
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 4.4e-16 89.4 86 60.5
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 4.4e-16 89.4 94 58.5
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 4.4e-16 89.4 86 62.8
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 7.5e-16 88.6 269 34.2
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.3e-15 87.8 94 55.3
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.3e-15 87.8 68 69.1
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 1.7e-15 87.4 86 61.6
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.7e-15 87.4 243 32.5
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 2.2e-15 87.0 65 70.8
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 2.2e-15 87.0 65 70.8
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.2e-15 87.0 198 39.4
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 2.8e-15 86.7 104 46.2
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 3.7e-15 86.3 87 55.2
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 6.3e-15 85.5 65 70.8
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 6.3e-15 85.5 83 55.4
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 8.3e-15 85.1 86 59.3
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 8.3e-15 85.1 252 30.6
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 8.3e-15 85.1 233 33.5
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 8.3e-15 85.1 71 63.4
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 1.1e-14 84.7 207 36.2
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.1e-14 84.7 259 35.5
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.4e-14 83.6 241 32.4
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 2.4e-14 83.6 78 60.3
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 3.1e-14 83.2 90 53.3
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 3.1e-14 83.2 71 60.6
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.1e-14 82.8 85 56.5
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 7.0e-14 82.0 182 37.9
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 7.0e-14 82.0 182 37.9
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 7.0e-14 82.0 86 57.0
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 7.0e-14 82.0 96 50.0
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 9.1e-14 81.6 264 32.2
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.2e-13 81.3 253 30.4
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.6e-13 80.9 61 70.5
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.6e-13 80.9 232 32.3
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 2.0e-13 80.5 179 38.0
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 3.5e-13 79.7 250 31.2
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 3.5e-13 79.7 91 53.8
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 3.5e-13 79.7 88 53.4
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 4.5e-13 79.3 61 70.5
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 4.5e-13 79.3 174 36.8
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 7.7e-13 78.6 61 68.9
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 1.0e-12 78.2 244 33.2
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.7e-12 77.4 70 58.6
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.3e-12 77.0 86 51.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.3e-12 77.0 175 38.9
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 3.8e-12 76.3 72 59.7
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 1.9e-11 73.9 224 32.6
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.5e-11 73.6 222 30.2
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 2.5e-11 73.6 170 37.6
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 2.5e-11 73.6 76 50.0
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 4.2e-11 72.8 76 57.9
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.2e-10 71.2 199 33.7
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.6e-10 70.9 233 29.6
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 3.6e-10 69.7 97 51.5
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 3.6e-10 69.7 80 48.8
ATR0594G102 Amborella trichopoda HOM05D004973 ORTHO05D006119 1.8e-09 67.4 85 49.4
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 1.8e-09 67.4 168 36.3
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 1.8e-09 67.4 210 30.5
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 4.0e-09 66.2 255 26.3
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 3.4e-08 63.2 72 45.8
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 3.4e-08 63.2 212 33.0
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 9.8e-08 61.6 72 44.4
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 2.2e-07 60.5 245 31.8
Ah.15g091990 Amaranthus hybridus HOM05D004973 ORTHO05D006119 4.9e-07 59.3 236 28.8
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 1.1e-06 58.2 213 32.9
Pp3c3_36380 Physcomitrium patens HOM05D027944 ORTHO05D019295 5.4e-06 55.8 61 50.8
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 9.2e-06 55.1 105 36.2


User provided reference genes

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