Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 6.1e-32 140.2 71 100.0
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.6e-25 117.1 71 80.3
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 7.3e-25 116.7 71 78.9
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 9.5e-25 116.3 71 78.9
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.2e-24 115.9 71 78.9
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.2e-24 115.9 71 80.3
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.6e-24 115.5 72 80.6
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 2.1e-24 115.2 71 78.9
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 78.9
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 78.9
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 77.5
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.6e-24 114.4 71 78.9
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 3.6e-24 114.4 70 77.1
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.4e-23 112.5 71 78.9
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.4e-23 112.5 68 79.4
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 77.5
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.8e-23 112.1 69 78.3
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.3e-23 111.7 72 77.8
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.3e-23 111.7 71 80.3
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.3e-23 111.7 72 73.6
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 2.3e-23 111.7 69 78.3
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 3.1e-23 111.3 69 76.8
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 3.1e-23 111.3 66 78.8
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.1e-23 111.3 71 77.5
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 4.0e-23 110.9 66 81.8
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.0e-23 110.9 71 78.9
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.0e-23 110.9 71 78.9
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 4.0e-23 110.9 70 74.3
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 4.0e-23 110.9 68 76.5
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 5.2e-23 110.5 71 74.6
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 5.2e-23 110.5 71 78.9
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 5.2e-23 110.5 70 78.6
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 5.2e-23 110.5 69 76.8
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 6.8e-23 110.2 71 74.6
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 6.8e-23 110.2 72 77.8
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 6.8e-23 110.2 72 77.8
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 6.8e-23 110.2 66 80.3
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 6.8e-23 110.2 71 76.1
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.2e-22 109.4 71 76.1
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.2e-22 109.4 71 76.1
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 71 77.5
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.2e-22 109.4 66 80.3
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 66 78.8
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.2e-22 109.4 70 72.9
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.5e-22 109.0 67 80.6
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.5e-22 109.0 69 75.4
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.5e-22 109.0 72 75.0
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.5e-22 109.0 66 78.8
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.0e-22 108.6 71 76.1
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.0e-22 108.6 70 72.9
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 2.0e-22 108.6 66 77.3
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.0e-22 108.6 72 75.0
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 2.6e-22 108.2 71 76.1
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.6e-22 108.2 69 76.8
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.6e-22 108.2 66 77.3
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 2.6e-22 108.2 68 77.9
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 2.6e-22 108.2 68 77.9
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 3.4e-22 107.8 71 73.2
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 4.4e-22 107.5 72 72.2
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 4.4e-22 107.5 65 78.5
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 5.8e-22 107.1 69 73.9
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 5.8e-22 107.1 69 76.8
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 5.8e-22 107.1 70 70.0
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 5.8e-22 107.1 71 76.1
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 5.8e-22 107.1 69 73.9
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 7.5e-22 106.7 69 76.8
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 7.5e-22 106.7 62 80.6
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 7.5e-22 106.7 71 73.2
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 7.5e-22 106.7 69 73.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 9.8e-22 106.3 72 76.4
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 9.8e-22 106.3 72 76.4
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 9.8e-22 106.3 65 78.5
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 9.8e-22 106.3 70 75.7
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 9.8e-22 106.3 70 75.7
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 9.8e-22 106.3 70 75.7
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 9.8e-22 106.3 73 71.2
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 9.8e-22 106.3 73 71.2
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 9.8e-22 106.3 69 71.0
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.3e-21 105.9 65 76.9
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.3e-21 105.9 71 73.2
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 72 73.6
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.3e-21 105.9 72 73.6
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 1.7e-21 105.5 70 70.0
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.7e-21 105.5 73 69.9
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.7e-21 105.5 71 70.4
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.7e-21 105.5 69 75.4
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 2.2e-21 105.1 68 72.1
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.9e-21 104.8 70 74.3
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.9e-21 104.8 70 74.3
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.9e-21 104.8 70 74.3
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.9e-21 104.8 70 74.3
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.9e-21 104.8 72 72.2
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 4.9e-21 104.0 71 73.2
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 4.9e-21 104.0 67 76.1
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.9e-21 104.0 67 76.1
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 6.4e-21 103.6 65 75.4
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-20 102.8 70 70.0
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.1e-20 102.8 72 72.2
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 3.2e-20 101.3 65 72.3
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 3.2e-20 101.3 71 70.4
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 4.1e-20 100.9 65 72.3
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 4.1e-20 100.9 65 72.3
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 4.1e-20 100.9 65 72.3
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 4.1e-20 100.9 65 72.3
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.4e-20 100.5 74 70.3
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.0e-20 100.1 65 72.3
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 7.0e-20 100.1 72 70.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 9.2e-20 99.8 71 67.6
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 9.2e-20 99.8 71 67.6
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.2e-19 99.4 77 63.6
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.6e-19 99.0 67 68.7
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.1e-19 98.6 71 67.6
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 2.7e-19 98.2 61 73.8
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.7e-19 98.2 65 70.8
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 3.5e-19 97.8 62 72.6
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.5e-19 97.8 65 69.2
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 3.5e-19 97.8 61 72.1
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.6e-19 97.4 93 59.1
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 7.8e-19 96.7 60 75.0
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 7.8e-19 96.7 60 75.0
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 7.8e-19 96.7 60 75.0
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 7.8e-19 96.7 60 75.0
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 7.8e-19 96.7 60 75.0
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 7.8e-19 96.7 60 75.0
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.0e-18 96.3 61 72.1
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.3e-18 95.9 61 72.1
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.3e-18 95.9 61 72.1
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.3e-18 95.9 61 72.1
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.3e-18 95.9 61 72.1
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 1.3e-18 95.9 69 65.2
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.3e-18 95.9 61 72.1
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 1.3e-18 95.9 61 70.5
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 1.7e-18 95.5 61 70.5
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.7e-18 95.5 75 65.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.0e-18 94.7 91 59.3
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 3.9e-18 94.4 97 55.7
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.9e-18 94.4 62 67.7
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 5.1e-18 94.0 66 66.7
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 6.6e-18 93.6 67 73.1
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 8.6e-18 93.2 66 66.7
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.1e-17 92.8 95 56.8
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 1.5e-17 92.4 55 80.0
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.9e-17 92.0 63 71.4
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.6e-17 90.5 55 76.4
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 7.3e-17 90.1 51 84.3
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 9.5e-17 89.7 55 74.5
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.1e-16 88.6 90 54.4
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.1e-16 88.6 93 51.6
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 2.8e-16 88.2 67 58.2
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 4.7e-16 87.4 61 70.5
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.8e-15 85.5 56 73.2
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 3.1e-15 84.7 56 75.0
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 3.1e-15 84.7 55 69.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 4.0e-15 84.3 52 71.2
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.8e-15 83.6 56 73.2
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 8.9e-15 83.2 56 69.6
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.2e-14 82.8 54 72.2
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 2.0e-14 82.0 50 76.0
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 5.8e-14 80.5 57 70.2
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 1.3e-13 79.3 58 65.5
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 1.3e-13 79.3 54 66.7
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.7e-13 79.0 49 73.5
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.7e-13 79.0 65 49.2
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.9e-13 78.2 62 53.2
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 2.9e-13 78.2 56 67.9
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.9e-13 77.4 56 64.3
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 6.4e-13 77.0 54 68.5
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 7.1e-12 73.6 56 60.7
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.6e-11 72.4 55 58.2
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 2.1e-11 72.0 60 55.0
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 2.7e-11 71.6 49 63.3
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.7e-11 71.6 51 66.7
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 4.6e-11 70.9 50 62.0
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.5e-09 65.9 40 72.5
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.5e-09 65.9 38 78.9
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 9.5e-09 63.2 39 71.8
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.2e-08 60.5 51 58.8
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.2e-08 60.5 51 58.8
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.2e-06 56.2 51 52.9
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 1.5e-06 55.8 43 65.1
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.5e-06 55.8 32 78.1


User provided reference genes

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