Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 9.0e-77 290.4 174 100.0
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 1.2e-52 210.3 174 69.5
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 2.6e-47 192.6 174 69.5
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 7.2e-42 174.5 174 55.7
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 6.1e-41 171.4 173 63.6
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 1.6e-28 130.2 170 46.5
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 2.9e-27 125.9 188 41.5
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 3.3e-26 122.5 179 45.8
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 5.5e-26 121.7 175 49.1
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 5.5e-26 121.7 170 41.8
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 7.2e-26 121.3 175 42.9
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 6.1e-25 118.2 175 40.0
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 6.1e-25 118.2 171 42.1
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 1.0e-24 117.5 174 42.0
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 1.0e-24 117.5 182 55.5
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 1.0e-24 117.5 178 40.4
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 1.4e-24 117.1 177 39.5
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 1.4e-24 117.1 171 40.4
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 1.8e-24 116.7 170 50.6
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 3.0e-24 115.9 171 41.5
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 5.2e-24 115.2 180 46.1
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 2.0e-23 113.2 184 39.1
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 3.4e-23 112.5 175 40.6
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 3.4e-23 112.5 184 37.5
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 4.4e-23 112.1 176 48.3
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 5.7e-23 111.7 169 43.8
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 7.5e-23 111.3 178 51.7
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 1.3e-22 110.5 176 47.7
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 1.3e-22 110.5 169 40.2
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.9e-22 108.6 176 40.9
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 6.3e-22 108.2 174 40.8
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 8.3e-22 107.8 180 39.4
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 1.8e-21 106.7 172 40.7
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 2.4e-21 106.3 176 39.2
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 5.4e-21 105.1 182 39.0
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 5.4e-21 105.1 183 48.6
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 7.0e-21 104.8 175 38.9
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 7.0e-21 104.8 170 40.6
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 7.0e-21 104.8 173 43.9
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 9.2e-21 104.4 181 38.7
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 9.2e-21 104.4 168 40.5
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 9.2e-21 104.4 174 40.8
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.6e-20 103.6 179 39.1
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 1.6e-20 103.6 173 52.6
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 2.7e-20 102.8 178 39.9
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 2.7e-20 102.8 184 36.4
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 5.9e-20 101.7 184 35.9
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 5.9e-20 101.7 180 40.6
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 7.8e-20 101.3 173 46.2
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 7.8e-20 101.3 181 39.8
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 7.8e-20 101.3 184 38.0
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 2.9e-19 99.4 181 40.9
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 3.8e-19 99.0 177 34.5
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 3.8e-19 99.0 181 47.0
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 5.0e-19 98.6 174 36.8
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 8.6e-19 97.8 180 40.0
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 8.6e-19 97.8 179 38.5
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 1.1e-18 97.4 189 33.3
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 1.1e-18 97.4 174 37.4
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.5e-18 97.1 185 37.8
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 1.5e-18 97.1 177 35.6
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 1.5e-18 97.1 180 49.4
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 2.5e-18 96.3 177 33.9
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 5.6e-18 95.1 181 48.6
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 5.6e-18 95.1 175 40.6
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 7.3e-18 94.7 180 44.4
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 9.5e-18 94.4 171 49.7
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.2e-17 94.0 180 36.1
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.2e-17 94.0 180 43.9
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 2.8e-17 92.8 181 44.2
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 2.8e-17 92.8 181 44.2
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.6e-17 92.4 181 44.2
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 4.7e-17 92.0 183 33.9
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 6.1e-17 91.7 183 33.3
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 6.1e-17 91.7 174 53.4
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 6.1e-17 91.7 170 38.8
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 8.0e-17 91.3 184 34.8
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 8.0e-17 91.3 176 38.6
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 1.0e-16 90.9 177 43.5
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 1.0e-16 90.9 172 45.9
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 1.4e-16 90.5 214 43.5
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.3e-16 89.7 177 46.9
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 3.0e-16 89.4 186 33.9
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 4.0e-16 89.0 159 34.0
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 6.8e-16 88.2 177 46.3
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 8.9e-16 87.8 181 45.9
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 8.9e-16 87.8 176 46.0
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 2.0e-15 86.7 168 47.6
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 2.6e-15 86.3 184 32.1
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 2.6e-15 86.3 168 36.3
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 3.4e-15 85.9 174 33.9
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 5.8e-15 85.1 169 32.0
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 7.5e-15 84.7 179 31.8
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 1.3e-14 84.0 175 32.0
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 1.3e-14 84.0 175 32.0
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 1.3e-14 84.0 178 37.6
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 1.7e-14 83.6 180 32.8
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 1.7e-14 83.6 179 38.0
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 2.2e-14 83.2 123 43.1
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 2.9e-14 82.8 178 33.1
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 2.9e-14 82.8 179 31.8
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 4.9e-14 82.0 203 38.4
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 4.9e-14 82.0 179 31.3
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 4.9e-14 82.0 171 30.4
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 6.4e-14 81.6 180 32.8
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 8.3e-14 81.3 178 32.0
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 8.3e-14 81.3 214 37.9
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 1.4e-13 80.5 181 48.1
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 1.4e-13 80.5 187 36.9
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 2.4e-13 79.7 180 31.7
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 2.4e-13 79.7 180 31.7
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 3.2e-13 79.3 161 33.5
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 7.0e-13 78.2 178 33.7
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 1.2e-12 77.4 188 30.9
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.6e-12 77.0 126 39.7
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 1.3e-11 73.9 157 35.0
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 1.3e-11 73.9 174 28.2
Lju41C43G9 Lonicera japonica HOM05D005478 ORTHO05D006426 2.3e-11 73.2 118 52.5
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 1.1e-10 70.9 167 31.7
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 3.3e-10 69.3 72 45.8
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 3.3e-10 69.3 167 31.1
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 2.8e-09 66.2 134 44.0
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.8e-09 66.2 52 63.5
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 4.0e-08 62.4 184 28.8
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 1.2e-07 60.8 173 41.6
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.7e-06 57.0 59 40.7
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 2.9e-06 56.2 145 29.7
Oeu018990.1 Olea europaea HOM05D005478 ORTHO05D006426 2.9e-06 56.2 92 60.9
Zm00001eb183740 Zea mays HOM05D044595 ORTHO05D006426 2.9e-06 56.2 166 24.1
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 6.4e-06 55.1 54 55.6


User provided reference genes

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