Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 7.6e-77 290.4 147 100.0
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.7e-47 193.0 149 71.8
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 9.1e-30 134.0 141 56.7
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.9e-27 126.3 196 45.9
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.5e-24 116.7 190 45.3
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 9.8e-24 114.0 197 45.2
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 3.7e-23 112.1 196 42.3
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 6.3e-23 111.3 197 43.7
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 6.3e-23 111.3 159 48.4
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.1e-22 110.5 192 42.7
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.1e-22 110.5 192 44.8
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.0e-21 106.3 187 42.8
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 2.7e-21 105.9 222 37.4
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 3.5e-21 105.5 197 40.6
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 5.9e-21 104.8 198 40.4
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 7.7e-21 104.4 191 40.8
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 7.7e-21 104.4 171 42.1
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.3e-20 103.6 199 41.2
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.3e-20 103.6 192 42.7
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.7e-20 103.2 199 42.7
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.3e-20 102.8 191 40.8
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.5e-19 100.1 201 40.8
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.9e-19 99.8 191 40.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.3e-19 99.0 199 38.7
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.3e-19 99.0 199 38.7
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 4.2e-19 98.6 199 37.2
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 9.5e-19 97.4 200 39.0
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 9.5e-19 97.4 196 40.8
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 3.6e-18 95.5 192 38.5
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 3.6e-18 95.5 197 40.6
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 4.7e-18 95.1 168 45.2
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 8.0e-18 94.4 195 41.5
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.0e-17 94.0 188 38.8
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 1.8e-17 93.2 202 37.6
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.0e-17 92.4 199 39.7
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 4.0e-17 92.0 188 39.4
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 5.2e-17 91.7 172 40.7
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 5.2e-17 91.7 159 40.9
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 5.2e-17 91.7 192 42.2
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 6.8e-17 91.3 163 39.9
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 6.8e-17 91.3 157 40.1
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 8.9e-17 90.9 219 38.4
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 8.9e-17 90.9 195 39.5
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.2e-16 90.5 170 42.4
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.2e-16 90.5 195 37.9
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.0e-16 89.7 138 43.5
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.6e-16 89.4 196 40.8
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.6e-16 89.4 190 37.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.4e-16 89.0 191 37.2
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 3.4e-16 89.0 209 39.2
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.4e-16 88.6 158 39.2
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.4e-16 88.6 203 35.5
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 4.4e-16 88.6 166 40.4
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.4e-16 88.6 182 44.5
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 5.7e-16 88.2 156 38.5
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 9.8e-16 87.4 195 34.9
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.7e-15 86.7 198 38.4
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.7e-15 85.5 182 43.4
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 3.7e-15 85.5 187 37.4
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 4.9e-15 85.1 195 35.4
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.9e-15 85.1 192 35.4
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 4.9e-15 85.1 197 41.1
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 6.3e-15 84.7 165 38.2
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 6.3e-15 84.7 165 38.2
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 8.3e-15 84.3 204 40.2
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.1e-14 84.0 166 37.3
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.1e-14 84.0 204 40.2
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.8e-14 83.2 188 36.2
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.8e-14 83.2 188 40.4
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.8e-14 83.2 178 38.2
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-14 82.8 196 40.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-14 82.4 185 35.1
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 3.1e-14 82.4 185 34.6
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 3.1e-14 82.4 185 34.6
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.1e-14 82.4 213 39.9
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 7.0e-14 81.3 191 40.8
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.2e-13 80.5 142 39.4
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.6e-13 80.1 193 38.9
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.5e-13 79.0 170 35.3
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 7.8e-13 77.8 90 50.0
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 7.8e-13 77.8 98 45.9
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.0e-12 77.4 173 38.2
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.0e-12 77.4 202 37.6
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-12 77.0 186 40.9
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.7e-12 76.6 137 39.4
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.7e-12 76.6 194 36.1
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 2.9e-12 75.9 195 36.4
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 3.8e-12 75.5 184 35.9
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 6.6e-12 74.7 175 33.7
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 6.6e-12 74.7 192 34.9
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 6.6e-12 74.7 165 35.2
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 6.6e-12 74.7 165 35.2
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 3.3e-11 72.4 188 34.0
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 4.3e-11 72.0 188 34.0
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 4.3e-11 72.0 207 33.3
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 5.6e-11 71.6 127 41.7
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 7.3e-11 71.2 188 34.0
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 7.3e-11 71.2 154 38.3
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-10 70.5 163 34.4
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.2e-10 70.5 99 44.4
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.6e-10 70.1 188 33.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.1e-10 69.7 161 34.2
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 3.6e-10 68.9 165 33.9
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 4.7e-10 68.6 188 33.0
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 6.1e-10 68.2 138 37.7
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 6.1e-10 68.2 61 67.2
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 8.0e-10 67.8 173 32.9
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 8.0e-10 67.8 188 34.6
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-09 67.4 180 33.9
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-09 67.4 187 33.2
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.0e-09 67.4 187 33.2
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.0e-09 67.4 137 40.9
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.4e-09 67.0 206 35.4
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.4e-09 67.0 181 33.1
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.4e-09 67.0 198 35.4
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.8e-09 66.6 195 34.4
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.8e-09 66.6 202 33.7
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-09 66.2 187 33.2
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-09 66.2 177 36.2
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 2.3e-09 66.2 187 32.6
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.3e-09 66.2 207 31.9
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 2.3e-09 66.2 198 34.8
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.1e-09 65.9 200 35.5
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 3.1e-09 65.9 161 38.5
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.1e-09 65.9 89 42.7
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 4.0e-09 65.5 164 32.9
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.2e-09 65.1 188 36.2
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 6.8e-09 64.7 188 33.5
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 6.8e-09 64.7 178 33.7
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-08 63.5 167 33.5
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-08 63.5 167 33.5
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.5e-08 63.5 160 38.8
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.0e-08 63.2 204 34.8
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.4e-08 62.4 120 40.8
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.4e-08 62.0 130 36.2
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 5.8e-08 61.6 198 33.8
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 9.8e-08 60.8 197 33.5
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-07 60.5 163 32.5
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.7e-07 60.1 207 30.9
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.7e-07 60.1 194 33.5
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.2e-07 59.7 168 29.8
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.2e-07 59.7 207 32.4
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 2.2e-07 59.7 160 35.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 3.7e-07 58.9 165 30.3
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 3.7e-07 58.9 157 32.5
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.7e-07 58.9 212 33.0
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 3.7e-07 58.9 159 35.2
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.9e-07 58.5 89 40.4
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 4.9e-07 58.5 153 35.9
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 6.4e-07 58.2 138 31.9
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.1e-06 57.4 182 33.0
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.1e-06 57.4 189 33.3
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.4e-06 57.0 193 32.6
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-06 56.2 89 42.7
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.4e-06 56.2 188 35.1
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 4.1e-06 55.5 211 31.3
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.1e-06 55.5 98 40.8


User provided reference genes

Program Settings