Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.7e-76 289.3 146 100.0
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 6.7e-49 197.6 147 72.1
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 3.3e-48 195.3 149 70.5
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 7.4e-32 141.0 141 57.4
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 6.3e-31 137.9 143 53.1
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 8.2e-31 137.5 145 52.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.4e-30 136.0 143 52.4
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.4e-30 136.0 143 55.2
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 4.1e-30 135.2 141 53.2
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 5.3e-30 134.8 145 52.4
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.9e-30 134.4 148 52.7
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 6.9e-30 134.4 148 52.7
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.2e-29 133.7 145 51.0
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.2e-29 133.7 135 53.3
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.5e-29 133.3 141 51.8
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 4.5e-29 131.7 145 50.3
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 7.7e-29 131.0 142 52.8
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.0e-28 130.6 147 51.0
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.3e-28 130.2 145 50.3
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.2e-28 129.4 148 50.7
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.2e-28 129.4 148 50.7
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.2e-28 129.4 145 51.0
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.9e-28 129.0 142 51.4
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 8.5e-28 127.5 147 51.0
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 8.5e-28 127.5 147 51.0
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.1e-27 127.1 148 50.0
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 2.1e-26 122.9 135 50.4
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 2.1e-26 122.9 140 51.4
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 4.7e-26 121.7 147 49.7
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 6.1e-26 121.3 147 50.3
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.0e-25 120.6 143 46.2
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.4e-25 120.2 145 47.6
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 1.8e-25 119.8 148 48.6
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.3e-25 119.4 142 48.6
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.3e-25 119.4 142 50.7
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 2.3e-25 119.4 142 51.4
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 3.0e-25 119.0 142 50.7
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.9e-25 118.6 142 47.9
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.9e-25 118.6 148 48.6
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 5.1e-25 118.2 145 50.3
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.1e-24 117.1 149 47.0
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 2.6e-24 115.9 144 46.5
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 5.7e-24 114.8 142 50.0
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 7.4e-24 114.4 131 50.4
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.3e-23 113.6 137 46.0
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.7e-23 113.2 145 46.2
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 2.8e-23 112.5 138 49.3
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.8e-23 112.5 161 43.5
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 2.8e-23 112.5 143 48.3
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 3.7e-23 112.1 143 49.7
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 4.8e-23 111.7 143 45.5
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 6.3e-23 111.3 140 49.3
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 6.3e-23 111.3 138 50.0
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 8.2e-23 110.9 144 46.5
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 1.4e-22 110.2 138 44.9
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.8e-22 109.8 134 48.5
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 4.1e-22 108.6 134 47.8
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 4.1e-22 108.6 141 43.3
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.0e-21 106.3 135 46.7
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.0e-21 106.3 135 46.7
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.6e-21 105.9 135 48.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.0e-20 104.0 139 46.8
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 8.5e-20 100.9 140 47.1
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.1e-19 100.5 136 44.1
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 3.2e-19 99.0 141 42.6
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 4.2e-19 98.6 140 45.0
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 5.5e-19 98.2 145 48.3
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 7.2e-19 97.8 157 39.5
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 9.4e-19 97.4 129 44.2
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.2e-18 97.1 157 39.5
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.2e-18 97.1 143 44.8
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.7e-18 95.9 85 51.8
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.4e-17 93.6 140 40.7
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 5.2e-17 91.7 121 45.5
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 6.7e-17 91.3 136 44.1
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.0e-16 89.7 141 36.9
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 5.7e-16 88.2 123 45.5
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 9.7e-16 87.4 143 41.3
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 9.7e-16 87.4 125 44.0
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 2.2e-15 86.3 148 41.9
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 2.8e-15 85.9 143 39.9
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.7e-15 85.5 145 39.3
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 3.7e-15 85.5 143 39.9
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.7e-15 85.5 125 44.0
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 3.7e-15 85.5 131 42.7
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 4.8e-15 85.1 125 43.2
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 8.2e-15 84.3 144 39.6
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.4e-14 83.6 140 41.4
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.8e-14 83.2 126 42.9
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.8e-14 83.2 141 39.7
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.4e-14 82.8 136 40.4
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 3.1e-14 82.4 134 42.5
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 4.1e-14 82.0 139 40.3
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 4.1e-14 82.0 102 43.1
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 5.3e-14 81.6 139 40.3
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.2e-13 80.5 132 43.2
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.6e-13 80.1 139 38.8
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.6e-13 80.1 152 34.2
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 2.0e-13 79.7 140 39.3
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.6e-13 79.3 122 38.5
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 3.5e-13 79.0 140 38.6
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 4.5e-13 78.6 143 41.3
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 4.5e-13 78.6 134 41.8
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.0e-12 77.4 140 37.1
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 1.3e-12 77.0 74 50.0
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.3e-12 77.0 146 34.9
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.8e-12 75.5 137 38.7
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 5.0e-12 75.1 142 39.4
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 6.5e-12 74.7 139 38.1
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 8.5e-12 74.3 86 44.2
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 2.5e-11 72.8 121 42.1
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 3.2e-11 72.4 144 34.0
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 4.2e-11 72.0 138 36.2
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 4.2e-11 72.0 123 39.0
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 1.2e-10 70.5 132 34.8
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.6e-10 68.9 136 40.4
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 3.6e-10 68.9 133 35.3
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 4.7e-10 68.6 128 35.9
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 6.1e-10 68.2 103 39.8
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 8.0e-10 67.8 142 35.9
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 2.3e-09 66.2 131 36.6
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 6.7e-09 64.7 131 35.9
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 6.7e-09 64.7 131 35.9
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 6.7e-09 64.7 131 35.9
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 6.7e-09 64.7 132 33.3
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 1.2e-08 63.9 133 36.8
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.5e-08 61.2 132 32.6
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 7.5e-08 61.2 114 39.5
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 9.7e-08 60.8 79 45.6
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 8.2e-07 57.8 129 31.8
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.1e-06 57.4 142 35.2
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.8e-06 56.6 135 33.3
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 4.1e-06 55.5 129 31.0


User provided reference genes

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