Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0449601 Helianthus annuus HOM05D006748 ORTHO05D008553 3.5e-25 117.5 58 100.0
HanXRQChr02g0044721 Helianthus annuus HOM05D006748 ORTHO05D008553 3.3e-23 110.9 58 96.6
ECA247G1600 Erigeron canadensis HOM05D006748 ORTHO05D008553 7.3e-23 109.8 58 93.1
Lsat_1_v5_gn_1_13560 Lactuca sativa HOM05D006748 ORTHO05D008553 1.4e-21 105.5 57 91.2
CsaV3_1G002810 Cucumis sativus L. HOM05D006748 ORTHO05D008553 1.3e-16 89.0 58 75.9
CANSAT80G2841 Cannabis sativa HOM05D006748 ORTHO05D008553 3.9e-16 87.4 56 75.0
ClCG06G015720 Citrullus lanatus HOM05D006748 ORTHO05D008553 5.0e-16 87.0 58 72.4
Nn3g17423 Nelumbo nucifera HOM05D006748 ORTHO05D008553 5.0e-16 87.0 52 80.8
Actinidia35032 Actinidia chinensis HOM05D006748 ORTHO05D008553 8.6e-16 86.3 58 72.4
SHI30118 Sapria himalayana HOM05D006748 ORTHO05D008553 8.6e-16 86.3 56 73.2
CSS0043022 Camellia sinensis var. sinensis HOM05D006748 ORTHO05D008553 1.1e-15 85.9 54 75.9
Hma1.2p1_0060F.1_g033230 Hydrangea macrophylla HOM05D006748 ORTHO05D008553 1.5e-15 85.5 58 70.7
Sed0010236 Sechium edule HOM05D006748 ORTHO05D008553 1.5e-15 85.5 58 70.7
Thecc.03G099400 Theobroma cacao HOM05D006748 ORTHO05D008553 1.5e-15 85.5 58 70.7
THA.LOC104818341 Tarenaya hassleriana HOM05D006748 ORTHO05D008553 1.9e-15 85.1 56 73.2
Gohir.A12G181700 Gossypium hirsutum HOM05D006748 ORTHO05D008553 2.5e-15 84.7 52 76.9
Gohir.D12G184500 Gossypium hirsutum HOM05D006748 ORTHO05D008553 2.5e-15 84.7 52 76.9
Gorai.008G197900 Gossypium raimondii HOM05D006748 ORTHO05D008553 2.5e-15 84.7 52 76.9
Lj5A105G56 Lonicera japonica HOM05D006748 ORTHO05D008553 2.5e-15 84.7 58 70.7
Dinv10524 Davidia involucrata HOM05D006748 ORTHO05D008553 3.3e-15 84.3 58 69.0
BcaB05g21592 Brassica carinata HOM05D006748 ORTHO05D008553 4.3e-15 84.0 56 73.2
BcaC03g13204 Brassica carinata HOM05D006748 ORTHO05D008553 4.3e-15 84.0 54 75.9
C02p03380 Brassica napus HOM05D006748 ORTHO05D008553 4.3e-15 84.0 54 75.9
BolC2t06300H Brassica oleracea HOM05D006748 ORTHO05D008553 4.3e-15 84.0 54 75.9
BraA02t04939Z Brassica rapa HOM05D006748 ORTHO05D008553 4.3e-15 84.0 54 75.9
CiPaw.12G007800 Carya illinoinensis HOM05D006748 ORTHO05D008553 4.3e-15 84.0 58 69.0
Duzib084G0059 Durio zibethinus HOM05D006748 ORTHO05D008553 4.3e-15 84.0 58 69.0
EL10Ac5g11112 Beta vulgaris HOM05D006748 ORTHO05D008553 5.6e-15 83.6 58 69.0
Cfa019312 Carpinus fangiana HOM05D006748 ORTHO05D008553 5.6e-15 83.6 58 67.2
FAN13G1579 Fragaria x ananassa HOM05D006748 ORTHO05D008553 5.6e-15 83.6 52 78.8
AL6G18300 Arabidopsis lyrata HOM05D006748 ORTHO05D008553 7.3e-15 83.2 56 71.4
AT5G07960 Arabidopsis thaliana HOM05D006748 ORTHO05D008553 7.3e-15 83.2 56 71.4
Carub.0006s0686 Capsella rubella HOM05D006748 ORTHO05D008553 7.3e-15 83.2 56 71.4
CARHR205230 Cardamine hirsuta HOM05D006748 ORTHO05D008553 7.3e-15 83.2 56 71.4
Ciclev10023002m.g Citrus clementina HOM05D006748 ORTHO05D008553 7.3e-15 83.2 58 70.7
MELO3C017217.2 Cucumis melo HOM05D006748 ORTHO05D008553 7.3e-15 83.2 56 71.4
Potri.012G065500 Populus trichocarpa HOM05D006748 ORTHO05D008553 7.3e-15 83.2 58 72.4
Sp6g34980 Schrenkiella parvula HOM05D006748 ORTHO05D008553 7.3e-15 83.2 56 71.4
Hund09880 Selenicereus undatus HOM05D006748 ORTHO05D008553 7.3e-15 83.2 56 69.6
BcaC06g32512 Brassica carinata HOM05D006748 ORTHO05D008553 9.5e-15 82.8 56 69.6
C09p68960 Brassica napus HOM05D006748 ORTHO05D008553 9.5e-15 82.8 56 69.6
BraA10t44914Z Brassica rapa HOM05D006748 ORTHO05D008553 9.5e-15 82.8 56 69.6
Thhalv10015079m.g Eutrema salsugineum HOM05D006748 ORTHO05D008553 9.5e-15 82.8 56 69.6
TWI81G0385 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 1.2e-14 82.4 56 69.6
Haze_07696 Corylus avellana HOM05D006748 ORTHO05D008553 1.6e-14 82.0 58 65.5
FvH4_5g14060 Fragaria vesca HOM05D006748 ORTHO05D008553 1.6e-14 82.0 52 76.9
FvH4_5g14160 Fragaria vesca HOM05D006748 ORTHO05D008553 1.6e-14 82.0 52 76.9
Potri.015G056300 Populus trichocarpa HOM05D006748 ORTHO05D008553 1.6e-14 82.0 52 76.9
Cpa.g.sc94.24 Carica papaya HOM05D006748 ORTHO05D008553 2.1e-14 81.6 58 67.2
TAR622G0828 Trochodendron aralioides HOM05D006748 ORTHO05D008553 2.1e-14 81.6 58 69.0
Aa31LG3G18570 Aethionema arabicum HOM05D006748 ORTHO05D008553 2.8e-14 81.3 56 69.6
Eucgr.K02517 Eucalyptus grandis HOM05D006748 ORTHO05D008553 2.8e-14 81.3 54 70.4
MD14G1210100 Malus domestica HOM05D006748 ORTHO05D008553 2.8e-14 81.3 52 75.0
Manes.06G086100 Manihot esculenta HOM05D006748 ORTHO05D008553 2.8e-14 81.3 52 73.1
QL10p019141 Quercus lobata HOM05D006748 ORTHO05D008553 2.8e-14 81.3 52 71.2
PSO541G5074 Papaver somniferum HOM05D006748 ORTHO05D008553 3.6e-14 80.9 58 69.0
PSO675G4773 Papaver somniferum HOM05D006748 ORTHO05D008553 3.6e-14 80.9 58 69.0
Sed0016176 Sechium edule HOM05D006748 ORTHO05D008553 3.6e-14 80.9 58 65.5
Atru.chr9.414 Acer truncatum HOM05D006748 ORTHO05D008553 4.7e-14 80.5 58 70.7
BolC9t59641H Brassica oleracea HOM05D006748 ORTHO05D008553 8.1e-14 79.7 56 67.9
RcHm_v2.0_Chr7g0182761 Rosa chinensis HOM05D006748 ORTHO05D008553 8.1e-14 79.7 52 73.1
MD06G1200600 Malus domestica HOM05D006748 ORTHO05D008553 1.1e-13 79.3 52 71.2
Zm00001eb057720 Zea mays HOM05D006748 ORTHO05D008553 1.1e-13 79.3 52 69.2
Ca_18978_v3 Cicer arietinum L. HOM05D006748 ORTHO05D008553 1.8e-13 78.6 52 67.3
Os03g0756800 Oryza sativa ssp. japonica HOM05D006748 ORTHO05D008553 1.8e-13 78.6 56 64.3
Glyma.06G201800 Glycine max HOM05D006748 ORTHO05D008553 2.3e-13 78.2 52 65.4
Phvul.009G193300 Phaseolus vulgaris HOM05D006748 ORTHO05D008553 2.3e-13 78.2 52 65.4
Medtr3g024170 Medicago truncatula HOM05D006748 ORTHO05D008553 3.1e-13 77.8 52 65.4
Medtr3g024190 Medicago truncatula HOM05D006748 ORTHO05D008553 3.1e-13 77.8 52 65.4
Psat5g203080 Pisum sativum HOM05D006748 ORTHO05D008553 3.1e-13 77.8 52 65.4
TWI60G0647 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 3.1e-13 77.8 56 64.3
A10p28650 Brassica napus HOM05D006748 ORTHO05D008553 5.2e-13 77.0 53 67.9
Lj1g0012744 Lotus japonicus HOM05D006748 ORTHO05D008553 6.8e-13 76.6 52 63.5
TPR.G12215 Trifolium pratense HOM05D006748 ORTHO05D008553 1.2e-12 75.9 56 60.7
PGR044G1724 Punica granatum HOM05D006748 ORTHO05D008553 2.0e-12 75.1 54 68.5
Hund02598 Selenicereus undatus HOM05D006748 ORTHO05D008553 2.0e-12 75.1 50 66.0
Oeu008258.1 Olea europaea HOM05D006748 ORTHO05D008553 2.6e-12 74.7 48 72.9
Lalb_Chr16g0391551 Lupinus albus HOM05D006748 ORTHO05D008553 3.4e-12 74.3 52 65.4
Mapoly0019s0070 Marchantia polymorpha HOM05D006748 ORTHO05D008553 3.4e-12 74.3 54 66.7
SMO201G0125 Selaginella moellendorffii HOM05D006748 ORTHO05D008553 4.4e-12 73.9 58 62.1
HPP92_019473 Vanilla planifolia HOM05D006748 ORTHO05D008553 4.4e-12 73.9 48 72.9
GSVIVG01007891001 Vitis vinifera HOM05D006748 ORTHO05D008553 5.8e-12 73.6 48 72.9
Lalb_Chr09g0334301 Lupinus albus HOM05D006748 ORTHO05D008553 7.5e-12 73.2 52 63.5
Sopen06g026810 Solanum pennellii HOM05D006748 ORTHO05D008553 1.3e-11 72.4 59 64.4
unitig_750.g28509 Utricularia gibba HOM05D006748 ORTHO05D008553 2.2e-11 71.6 48 72.9
Nitab4.5_0005160g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 3.7e-11 70.9 48 70.8
Nitab4.5_0011867g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 3.7e-11 70.9 48 70.8
Peaxi162Scf00702g00422 Petunia axillaris HOM05D006748 ORTHO05D008553 3.7e-11 70.9 48 70.8
Solyc06g069520.3 Solanum lycopersicum HOM05D006748 ORTHO05D008553 6.4e-11 70.1 57 63.2
MSTRG.22979 Avicennia marina HOM05D006748 ORTHO05D008553 1.4e-10 68.9 48 68.8
Migut.I00325 Erythranthe guttata HOM05D006748 ORTHO05D008553 1.4e-10 68.9 48 70.8
SGA_v2.0_scaffold49G18162 Striga asiatica HOM05D006748 ORTHO05D008553 1.9e-10 68.6 48 68.8
Cc10_g05660 Coffea canephora HOM05D006748 ORTHO05D008553 3.2e-10 67.8 48 68.8
CDE05G0122 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 9.2e-10 66.2 52 61.5
QL09p026979 Quercus lobata HOM05D006748 ORTHO05D008553 7.8e-09 63.2 84 45.2
CBR_g90015 Chara braunii HOM05D006748 ORTHO05D008553 1.0e-08 62.8 49 57.1
vmacro16507 Vaccinium macrocarpon HOM05D006748 ORTHO05D008553 5.1e-08 60.5 37 78.4
Actinidia19003 Actinidia chinensis HOM05D006748 ORTHO05D008553 1.1e-07 59.3 45 68.9
Sc12g0006600 Simmondsia chinensis HOM05D006748 ORTHO05D008553 1.1e-07 59.3 38 76.3
AUR62021580 Chenopodium quinoa HOM05D006748 ORTHO05D008553 1.5e-07 58.9 37 75.7
Rhsim12G0151700 Rhododendron simsii HOM05D006748 ORTHO05D008553 1.5e-07 58.9 33 84.8
AUR62008510 Chenopodium quinoa HOM05D006748 ORTHO05D008553 1.9e-07 58.5 37 73.0
VMungo1309G2295 Vigna mungo HOM05D006748 ORTHO05D008553 2.5e-07 58.2 48 60.4
arahy.Tifrunner.gnm1.ann1.HPW464 Arachis hypogaea HOM05D006748 ORTHO05D008553 3.3e-07 57.8 32 81.2
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 4.3e-07 57.4 37 70.3
HPP92_006054 Vanilla planifolia HOM05D006748 ORTHO05D008553 4.3e-07 57.4 47 61.7
HanXRQChr16g0510351 Helianthus annuus HOM05D006748 ORTHO05D008553 9.5e-07 56.2 26 100.0
Manes.14G084550 Manihot esculenta HOM05D006748 ORTHO05D008553 8.1e-06 53.1 32 78.1


User provided reference genes

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