Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0448901 Helianthus annuus HOM05D005244 ORTHO05D006539 1.3e-57 226.1 112 100.0
HanXRQChr10g0309401 Helianthus annuus HOM05D005244 ORTHO05D006539 1.7e-36 156.0 94 78.7
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 3.2e-35 151.8 95 78.9
Lsat_1_v5_gn_5_80020 Lactuca sativa HOM05D005244 ORTHO05D006539 2.6e-32 142.1 101 69.3
DCAR_020446 Daucus carota HOM05D005244 ORTHO05D006539 4.1e-30 134.8 100 67.0
Actinidia07539 Actinidia chinensis HOM05D005244 ORTHO05D006539 2.6e-29 132.1 100 65.0
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 5.9e-29 131.0 100 62.0
Cpa.g.sc91.76 Carica papaya HOM05D005244 ORTHO05D006539 5.9e-29 131.0 100 63.0
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 5.9e-29 131.0 99 64.6
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 7.7e-29 130.6 100 62.0
MD04G1001000 Malus domestica HOM05D005244 ORTHO05D006539 2.2e-28 129.0 100 61.0
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 3.8e-28 128.3 100 61.0
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 6.5e-28 127.5 100 60.0
Rhsim01G0102600 Rhododendron simsii HOM05D005244 ORTHO05D006539 8.5e-28 127.1 100 62.0
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 1.1e-27 126.7 100 61.0
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 1.4e-27 126.3 100 61.0
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 1.4e-27 126.3 100 59.0
SalBow5G4830 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.4e-27 126.3 100 60.0
Prupe.1G001000 Prunus persica HOM05D005244 ORTHO05D006539 1.9e-27 125.9 100 60.0
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 2.5e-27 125.6 100 60.0
Haze_21246 Corylus avellana HOM05D005244 ORTHO05D006539 3.2e-27 125.2 99 62.6
Peaxi162Scf01347g00132 Petunia axillaris HOM05D005244 ORTHO05D006539 3.2e-27 125.2 102 57.8
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 3.2e-27 125.2 100 60.0
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 4.2e-27 124.8 100 58.0
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 7.2e-27 124.0 100 59.0
Manes.02G225500 Manihot esculenta HOM05D005244 ORTHO05D006539 7.2e-27 124.0 100 60.0
Thecc.09G197300 Theobroma cacao HOM05D005244 ORTHO05D006539 9.4e-27 123.6 100 59.0
Duzib168G0486 Durio zibethinus HOM05D005244 ORTHO05D006539 1.2e-26 123.2 100 59.0
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 1.6e-26 122.9 100 60.0
Sed0013671 Sechium edule HOM05D005244 ORTHO05D006539 1.6e-26 122.9 100 57.0
vmacro20731 Vaccinium macrocarpon HOM05D005244 ORTHO05D006539 1.6e-26 122.9 100 61.0
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 2.1e-26 122.5 100 59.0
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 2.1e-26 122.5 100 59.0
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 2.7e-26 122.1 100 61.0
Cc06_g23580 Coffea canephora HOM05D005244 ORTHO05D006539 2.7e-26 122.1 100 59.0
Sed0018574 Sechium edule HOM05D005244 ORTHO05D006539 2.7e-26 122.1 100 58.0
RcHm_v2.0_Chr4g0393651 Rosa chinensis HOM05D005244 ORTHO05D006539 3.6e-26 121.7 100 55.0
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 4.7e-26 121.3 94 60.6
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 4.7e-26 121.3 100 59.0
Aqoxy7G02584 Aquilegia oxysepala HOM05D005244 ORTHO05D006539 1.0e-25 120.2 100 58.0
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 1.4e-25 119.8 94 60.6
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 1.4e-25 119.8 100 55.0
Sed0028124 Sechium edule HOM05D005244 ORTHO05D006539 2.3e-25 119.0 100 56.0
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 2.3e-25 119.0 100 57.0
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 3.0e-25 118.6 99 58.6
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 3.9e-25 118.2 100 56.0
ClCG03G011630 Citrullus lanatus HOM05D005244 ORTHO05D006539 5.2e-25 117.9 100 57.0
MBI16_g40729_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 5.2e-25 117.9 100 58.0
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 5.2e-25 117.9 94 60.6
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 6.7e-25 117.5 100 56.0
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 6.7e-25 117.5 100 59.0
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 6.7e-25 117.5 100 54.0
COL.COLO4_08830 Corchorus olitorius HOM05D005244 ORTHO05D006539 8.8e-25 117.1 100 57.0
FvH4_4g03800 Fragaria vesca HOM05D005244 ORTHO05D006539 8.8e-25 117.1 104 52.9
FAN12G3076 Fragaria x ananassa HOM05D005244 ORTHO05D006539 8.8e-25 117.1 104 52.9
FAN12G3464 Fragaria x ananassa HOM05D005244 ORTHO05D006539 8.8e-25 117.1 104 52.9
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 1.1e-24 116.7 94 60.6
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 1.5e-24 116.3 100 57.0
MELO3C010012.2 Cucumis melo HOM05D005244 ORTHO05D006539 2.0e-24 115.9 100 56.0
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 2.6e-24 115.5 100 54.0
arahy.Tifrunner.gnm1.ann1.GU0YFX Arachis hypogaea HOM05D005244 ORTHO05D006539 3.3e-24 115.2 102 58.8
arahy.Tifrunner.gnm1.ann1.MPB88K Arachis hypogaea HOM05D005244 ORTHO05D006539 3.3e-24 115.2 102 58.8
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 3.3e-24 115.2 100 55.0
CsaV3_1G044170 Cucumis sativus L. HOM05D005244 ORTHO05D006539 3.3e-24 115.2 100 56.0
FAN22G0231 Fragaria x ananassa HOM05D005244 ORTHO05D006539 5.7e-24 114.4 104 52.9
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 7.4e-24 114.0 100 55.0
VMungo0464G0587 Vigna mungo HOM05D005244 ORTHO05D006539 7.4e-24 114.0 100 58.0
ATR0626G132 Amborella trichopoda HOM05D005244 ORTHO05D006539 9.7e-24 113.6 100 54.0
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 1.3e-23 113.2 100 54.0
A10p16080 Brassica napus HOM05D005244 ORTHO05D006539 1.3e-23 113.2 100 54.0
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 1.3e-23 113.2 100 54.0
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 1.3e-23 113.2 100 54.0
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 1.3e-23 113.2 100 54.0
PGR044G0827 Punica granatum HOM05D005244 ORTHO05D006539 1.3e-23 113.2 100 54.0
Os02g0469200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 2.8e-23 112.1 100 54.0
Zm00001eb270590 Zea mays HOM05D005244 ORTHO05D006539 6.3e-23 110.9 100 54.0
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 8.2e-23 110.5 100 55.0
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 1.1e-22 110.2 100 55.0
AUR62027963 Chenopodium quinoa HOM05D005244 ORTHO05D006539 3.1e-22 108.6 94 57.4
Ca_25641_v3 Cicer arietinum L. HOM05D005244 ORTHO05D006539 3.1e-22 108.6 100 54.0
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 3.1e-22 108.6 89 56.2
HPP92_015815 Vanilla planifolia HOM05D005244 ORTHO05D006539 3.1e-22 108.6 89 58.4
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 3.1e-22 108.6 100 54.0
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 4.1e-22 108.2 94 56.4
Duzib170G1117 Durio zibethinus HOM05D005244 ORTHO05D006539 4.1e-22 108.2 100 54.0
Hund03212 Selenicereus undatus HOM05D005244 ORTHO05D006539 4.1e-22 108.2 115 51.3
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 5.3e-22 107.8 101 52.5
Medtr5g019500 Medicago truncatula HOM05D005244 ORTHO05D006539 9.1e-22 107.1 100 55.0
Oeu021241.1 Olea europaea HOM05D005244 ORTHO05D006539 9.1e-22 107.1 86 60.5
Psat1g052040 Pisum sativum HOM05D005244 ORTHO05D006539 9.1e-22 107.1 100 54.0
TPR.G18623 Trifolium pratense HOM05D005244 ORTHO05D006539 9.1e-22 107.1 100 54.0
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 1.2e-21 106.7 101 51.5
Zm00001eb175510 Zea mays HOM05D005244 ORTHO05D006539 1.2e-21 106.7 100 52.0
Zm00001eb016210 Zea mays HOM05D005244 ORTHO05D006539 1.6e-21 106.3 100 52.0
CDE05G2480 Ceratophyllum demersum HOM05D005244 ORTHO05D006539 2.6e-21 105.5 100 49.0
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 3.5e-21 105.1 91 52.7
Lalb_Chr22g0361681 Lupinus albus HOM05D005244 ORTHO05D006539 3.5e-21 105.1 100 55.0
Gohir.A08G016900 Gossypium hirsutum HOM05D005244 ORTHO05D006539 5.9e-21 104.4 100 50.0
Gohir.D08G027300 Gossypium hirsutum HOM05D005244 ORTHO05D006539 5.9e-21 104.4 100 50.0
Gorai.004G024200 Gossypium raimondii HOM05D005244 ORTHO05D006539 5.9e-21 104.4 100 50.0
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 2.9e-20 102.1 100 50.0
Zm00001eb035880 Zea mays HOM05D005244 ORTHO05D006539 1.5e-19 99.8 89 55.1
Zm00001eb357680 Zea mays HOM05D005244 ORTHO05D006539 1.5e-19 99.8 99 49.5
EL10Ac2g03605 Beta vulgaris HOM05D005244 ORTHO05D006539 1.9e-19 99.4 93 52.7
HPP92_015816 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.1e-18 95.9 77 59.7
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 4.4e-16 88.2 80 55.0
Mapoly0125s0017 Marchantia polymorpha HOM05D005244 ORTHO05D006539 1.7e-15 86.3 94 45.7
SMO367G0058 Selaginella moellendorffii HOM05D005244 ORTHO05D006539 4.8e-15 84.7 100 42.0
Pp3c14_21030 Physcomitrium patens HOM05D005244 ORTHO05D006539 6.3e-15 84.3 104 40.4
Hund19348 Selenicereus undatus HOM05D005244 ORTHO05D006539 2.3e-09 65.9 62 50.0
HPP92_015796 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.3e-09 65.9 54 57.4
Zm00001eb063080 Zea mays HOM05D005244 ORTHO05D006539 2.6e-08 62.4 64 46.9
CBR_g983 Chara braunii HOM05D005244 ORTHO05D006539 9.1e-06 53.9 63 34.9


User provided reference genes

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