Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.6e-76 289.3 142 100.0
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 5.1e-70 267.7 138 95.7
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 8.7e-70 266.9 143 93.0
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 1.3e-68 263.1 138 92.8
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 2.4e-59 232.3 142 76.1
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.4e-58 228.4 142 76.8
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 76.1
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 74.6
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 74.6
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 76.1
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 74.6
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 73.9
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 76.1
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 74.6
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 5.5e-56 221.1 140 75.0
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 72.5
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 73.2
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 73.2
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 73.2
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 71.8
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.6e-55 218.4 142 73.9
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 3.6e-55 218.4 141 73.8
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 71.8
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 6.1e-55 217.6 142 72.5
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 6.1e-55 217.6 142 73.2
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 7.9e-55 217.2 142 71.8
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 72.5
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 1.3e-54 216.5 142 72.5
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.8e-54 216.1 142 72.5
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.8e-54 216.1 142 73.2
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.3e-54 215.7 142 71.8
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 2.3e-54 215.7 142 71.1
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.9e-54 214.9 142 71.8
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.9e-54 214.9 142 72.5
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.7e-54 214.2 142 71.8
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 8.7e-54 213.8 142 71.8
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 8.7e-54 213.8 142 71.8
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.5e-53 213.0 141 71.6
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 71.8
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.9e-53 212.6 142 71.1
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.5e-53 212.2 142 69.0
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 3.3e-53 211.8 141 70.2
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.3e-53 211.5 141 70.9
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 5.7e-53 211.1 141 71.6
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 5.7e-53 211.1 142 70.4
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 9.7e-53 210.3 142 70.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 70.9
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 9.7e-53 210.3 142 71.1
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-52 209.9 142 70.4
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.3e-52 209.9 142 69.0
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 2.8e-52 208.8 139 71.2
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.7e-52 208.4 142 69.0
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 3.7e-52 208.4 141 69.5
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.7e-52 208.4 142 69.7
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 4.8e-52 208.0 142 69.0
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 4.8e-52 208.0 142 69.7
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 4.8e-52 208.0 142 69.7
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 70.9
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 8.2e-52 207.2 142 69.0
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 8.2e-52 207.2 142 69.0
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 8.2e-52 207.2 142 68.3
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-51 206.5 142 69.0
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.4e-51 206.5 142 69.0
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.8e-51 206.1 142 69.0
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.8e-51 206.1 143 69.9
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 2.4e-51 205.7 142 69.0
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 2.4e-51 205.7 142 69.0
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 2.4e-51 205.7 142 69.0
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 3.1e-51 205.3 142 69.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 3.1e-51 205.3 142 69.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 3.1e-51 205.3 142 69.0
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.1e-51 205.3 138 70.3
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.1e-51 204.9 142 66.2
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.1e-51 204.9 142 66.9
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.1e-51 204.9 142 66.9
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 68.3
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 9.1e-51 203.8 138 70.3
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 9.1e-51 203.8 138 70.3
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 69.0
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 9.1e-51 203.8 140 67.1
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.2e-50 203.4 139 70.5
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-50 203.4 142 68.3
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.2e-50 203.4 142 68.3
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.2e-50 203.4 142 66.9
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.2e-50 203.4 170 62.4
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.5e-50 203.0 142 68.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.5e-50 203.0 142 68.3
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.0e-50 202.6 140 67.1
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 2.6e-50 202.2 142 66.9
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 3.4e-50 201.8 145 69.0
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 3.4e-50 201.8 142 67.6
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.4e-50 201.8 140 67.1
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 3.4e-50 201.8 140 66.4
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.5e-50 201.4 141 67.4
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.9e-50 201.1 134 70.9
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 7.7e-50 200.7 141 67.4
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 7.7e-50 200.7 141 67.4
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 7.7e-50 200.7 141 67.4
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.0e-49 200.3 141 68.1
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.3e-49 199.9 141 67.4
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.7e-49 199.5 142 67.6
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.8e-49 198.4 142 67.6
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 3.8e-49 198.4 142 64.1
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 6.5e-49 197.6 142 66.9
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 8.5e-49 197.2 193 54.9
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 8.5e-49 197.2 193 54.9
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 8.5e-49 197.2 138 67.4
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.4e-48 196.4 137 67.2
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.9e-48 196.1 136 66.2
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.5e-48 195.7 142 66.2
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.5e-48 195.7 140 66.4
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.2e-48 195.3 142 64.1
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 7.2e-48 194.1 140 69.3
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 7.2e-48 194.1 141 68.8
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 9.4e-48 193.7 140 65.7
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.6e-47 193.0 142 66.9
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.6e-47 193.0 141 66.7
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.6e-47 193.0 163 61.3
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.7e-47 192.2 142 64.8
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 6.1e-47 191.0 140 65.7
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.8e-46 189.5 142 64.1
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.8e-46 189.5 140 65.0
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 3.3e-45 185.3 191 50.3
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 5.7e-45 184.5 135 64.4
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 7.4e-45 184.1 135 64.4
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 9.7e-45 183.7 140 64.3
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 9.7e-45 183.7 142 64.8
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.3e-44 183.3 142 62.0
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.7e-44 183.0 118 72.9
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.2e-44 182.6 142 64.1
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.8e-44 182.2 135 64.4
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 3.7e-44 181.8 140 62.9
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.1e-43 180.3 142 61.3
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 4.1e-43 178.3 143 64.3
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 9.1e-43 177.2 142 63.4
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 9.1e-43 177.2 157 58.0
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.2e-42 176.8 140 65.0
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.3e-41 173.3 138 62.3
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.5e-41 171.0 175 54.3
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.1e-40 170.2 142 59.2
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 4.2e-40 168.3 107 73.8
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.6e-39 166.4 142 59.2
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 4.1e-35 151.8 141 54.6
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-33 146.7 141 53.2
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.9e-33 145.6 136 52.2
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.1e-32 143.7 126 56.3
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.5e-32 143.3 136 51.5
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.5e-32 142.5 138 55.1
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 2.1e-31 139.4 140 48.6
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.0e-30 137.1 141 48.2
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-30 136.7 141 48.2
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 5.2e-30 134.8 142 47.2
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 6.7e-30 134.4 289 33.6
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.8e-28 129.0 125 50.4
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 1.4e-27 126.7 80 73.8
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 7.7e-26 120.9 80 70.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 6.5e-25 117.9 126 48.4
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.1e-19 99.0 70 65.7
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 7.0e-19 97.8 115 49.6
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.0e-18 96.3 108 46.3
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.0e-18 96.3 108 46.3
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.0e-18 96.3 108 46.3
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.0e-17 94.0 67 67.2
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.3e-17 93.6 71 64.8
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.9e-17 92.4 77 59.7
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 6.5e-17 91.3 77 55.8
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 6.5e-17 91.3 62 67.7
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 6.5e-17 91.3 62 67.7
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.5e-16 90.1 117 41.0
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 7.2e-16 87.8 68 61.8
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 1.6e-15 86.7 107 49.5
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 3.6e-15 85.5 121 40.5
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 6.1e-15 84.7 108 44.4
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 3.0e-14 82.4 68 57.4
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 5.7e-13 78.2 110 46.4
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.6e-10 70.1 42 71.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 7.8e-10 67.8 42 71.4
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.7e-09 66.6 39 74.4
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 3.0e-06 55.8 120 30.8
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.0e-06 55.5 37 62.2
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 4.0e-06 55.5 35 65.7
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 5.2e-06 55.1 40 55.0


User provided reference genes

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