Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.7e-93 346.7 274 100.0
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.9e-60 236.9 269 77.3
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 2.4e-60 236.5 271 82.7
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 9.2e-60 234.6 265 81.5
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.6e-59 232.3 267 80.9
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.6e-59 232.3 265 81.5
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 4.6e-59 232.3 265 81.5
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.1e-57 227.6 267 80.9
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.3e-57 225.7 265 78.9
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 5.6e-57 225.3 265 78.9
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.6e-57 225.3 265 78.9
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 5.6e-57 225.3 229 90.8
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 9.6e-57 224.6 267 79.8
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.6e-56 223.8 271 79.0
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.6e-56 223.8 265 78.1
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.1e-56 223.4 267 80.1
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.1e-56 223.4 267 79.8
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 2.1e-56 223.4 269 78.8
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.8e-56 223.0 267 79.4
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.7e-56 222.2 267 78.7
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 6.2e-56 221.9 267 80.1
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 8.1e-56 221.5 267 79.0
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.1e-55 221.1 256 82.4
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.1e-55 221.1 267 80.1
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.8e-55 220.3 261 79.7
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.8e-55 220.3 268 76.5
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.8e-55 220.3 272 76.8
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 2.4e-55 219.9 272 68.8
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.4e-55 219.9 267 79.8
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.4e-55 219.9 267 79.8
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 5.2e-55 218.8 271 75.6
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 6.9e-55 218.4 265 78.5
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.2e-54 217.6 256 80.1
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.2e-54 217.6 267 77.9
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 2.0e-54 216.9 268 77.2
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.0e-54 216.9 267 77.9
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 2.6e-54 216.5 260 78.8
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 4.4e-54 215.7 254 78.3
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 4.4e-54 215.7 267 77.9
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 5.8e-54 215.3 265 71.7
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 7.6e-54 214.9 270 76.3
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.3e-53 214.2 272 76.1
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.3e-53 214.2 272 76.1
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.2e-53 213.4 265 78.1
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 2.9e-53 213.0 269 77.0
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 2.9e-53 213.0 269 77.0
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.9e-53 213.0 263 78.3
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 3.8e-53 212.6 266 75.6
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 4.9e-53 212.2 265 78.1
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 6.4e-53 211.8 267 77.2
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.4e-53 211.8 271 51.7
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.1e-52 211.1 266 75.6
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.1e-52 211.1 267 77.9
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.1e-52 211.1 265 73.6
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.1e-52 211.1 266 77.1
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.4e-52 210.7 267 77.9
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 4.2e-52 209.1 268 76.9
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 4.2e-52 209.1 268 76.9
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 4.2e-52 209.1 268 76.9
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 4.2e-52 209.1 268 76.9
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 4.2e-52 209.1 266 72.6
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 4.2e-52 209.1 267 74.5
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 5.4e-52 208.8 268 76.5
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 5.4e-52 208.8 257 78.6
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 5.4e-52 208.8 249 79.5
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 7.1e-52 208.4 263 77.2
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 9.3e-52 208.0 268 75.0
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 9.3e-52 208.0 263 77.6
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 9.3e-52 208.0 263 77.6
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.2e-51 207.6 267 77.9
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.2e-51 207.6 253 80.2
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 2.1e-51 206.8 264 76.5
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.7e-51 206.5 250 80.8
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 2.7e-51 206.5 267 77.2
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.5e-51 206.1 269 73.2
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 6.0e-51 205.3 270 74.8
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 7.8e-51 204.9 253 79.1
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 7.8e-51 204.9 275 74.5
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 7.8e-51 204.9 267 76.8
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 7.8e-51 204.9 274 74.5
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.0e-50 204.5 266 75.9
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.0e-50 204.5 270 75.2
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.3e-50 204.1 265 72.8
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.3e-50 204.1 265 72.8
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.3e-50 204.1 266 76.7
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.7e-50 203.8 273 75.1
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.7e-50 203.8 271 75.6
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.0e-50 203.0 275 73.1
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 5.1e-50 202.2 270 73.3
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 6.6e-50 201.8 267 74.9
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 8.7e-50 201.4 269 75.1
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.1e-49 201.1 275 73.5
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.1e-49 201.1 267 74.9
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.9e-49 200.3 268 75.7
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 2.5e-49 199.9 268 75.7
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 4.3e-49 199.1 268 75.7
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 4.3e-49 199.1 273 74.0
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 4.3e-49 199.1 258 75.6
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 7.3e-49 198.4 273 73.6
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 1.3e-48 197.6 263 74.5
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.3e-48 197.6 252 77.0
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.3e-48 197.6 275 72.4
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.6e-48 197.2 270 74.1
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 2.1e-48 196.8 273 73.6
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 2.1e-48 196.8 273 73.3
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 2.1e-48 196.8 273 73.6
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 3.6e-48 196.1 273 73.3
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.8e-48 195.7 268 75.0
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.4e-47 194.1 273 72.2
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 3.1e-47 193.0 267 72.3
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 3.1e-47 193.0 264 73.9
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 4.0e-47 192.6 265 72.8
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.3e-47 192.2 270 73.3
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 6.9e-47 191.8 266 75.6
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 6.9e-47 191.8 268 73.1
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.0e-46 190.3 265 67.5
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.6e-46 189.9 262 74.0
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 2.6e-46 189.9 229 82.5
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 4.5e-46 189.1 253 70.4
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 5.8e-46 188.7 267 74.2
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 7.6e-46 188.3 273 72.2
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 7.6e-46 188.3 280 69.3
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.3e-45 187.6 270 73.3
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 6.4e-45 185.3 244 78.3
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.9e-44 183.7 268 69.0
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.4e-44 183.3 257 74.7
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.2e-44 182.6 273 73.3
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.2e-44 182.6 236 81.8
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.1e-44 181.8 277 41.9
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 7.1e-44 181.8 268 72.4
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.7e-43 179.9 229 81.7
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 4.6e-43 179.1 271 71.2
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 8.7e-42 174.9 228 80.3
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.3e-40 171.0 240 77.1
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.6e-40 170.6 226 79.6
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 6.2e-40 168.7 251 71.7
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 3.1e-39 166.4 261 67.8
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 6.9e-39 165.2 250 73.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 6.9e-39 165.2 263 67.3
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-34 150.2 273 54.6
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-33 147.9 238 75.2
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 4.3e-33 146.0 211 80.6
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.4e-30 136.3 85 75.3
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.2e-27 127.9 207 77.8
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.2e-27 127.9 84 75.0
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 8.7e-26 121.7 91 62.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 8.7e-26 121.7 102 60.8
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 9.7e-25 118.2 209 75.1
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.7e-24 116.3 86 70.9
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.2e-22 111.3 247 54.7
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.6e-22 110.2 273 61.9
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 7.6e-22 108.6 257 63.8
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 1.4e-20 104.4 269 56.9
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 9.3e-20 101.7 76 65.8
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 8.8e-18 95.1 82 57.3
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 7.2e-12 75.5 53 69.8
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 5.7e-09 65.9 65 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 3.4e-06 56.6 248 55.6


User provided reference genes

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