Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0447641 Helianthus annuus HOM05D004796 ORTHO05D006527 5.3e-81 304.3 154 100.0
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 3.4e-75 285.0 156 94.9
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 9.4e-70 266.9 154 87.7
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 2.7e-64 248.8 157 80.9
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 5.5e-62 241.1 155 78.1
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 2.1e-61 239.2 159 76.1
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 2.8e-61 238.8 155 78.1
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 3.6e-61 238.4 154 77.3
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 6.1e-61 237.7 160 75.6
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 6.1e-61 237.7 155 76.8
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 8.0e-61 237.3 159 75.5
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 1.0e-60 236.9 154 76.6
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 1.4e-60 236.5 160 75.0
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 1.8e-60 236.1 159 75.5
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 1.8e-60 236.1 161 75.8
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 4.0e-60 235.0 157 75.8
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 8.9e-60 233.8 128 89.8
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 8.9e-60 233.8 153 79.7
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 1.2e-59 233.4 157 75.2
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 2.0e-59 232.6 157 75.2
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 3.4e-59 231.9 162 72.8
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 4.4e-59 231.5 154 75.3
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 5.7e-59 231.1 158 73.4
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 9.8e-59 230.3 159 74.2
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 9.8e-59 230.3 159 74.2
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 1.7e-58 229.6 163 71.8
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 2.2e-58 229.2 160 75.0
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 2.2e-58 229.2 157 74.5
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 2.9e-58 228.8 159 73.6
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 2.9e-58 228.8 158 74.7
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 8.3e-58 227.3 158 72.8
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 1.4e-57 226.5 155 76.1
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 1.4e-57 226.5 154 76.0
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 1.4e-57 226.5 154 76.0
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 1.4e-57 226.5 159 75.5
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 1.8e-57 226.1 154 76.0
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 2.4e-57 225.7 157 75.8
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 2.4e-57 225.7 156 73.1
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 2.4e-57 225.7 159 74.2
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 5.4e-57 224.6 158 74.1
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 7.0e-57 224.2 159 73.6
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 1.6e-56 223.0 158 72.8
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 2.0e-56 222.6 157 72.0
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 2.7e-56 222.2 159 72.3
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 2.7e-56 222.2 160 71.9
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 3.5e-56 221.9 155 74.2
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 5.9e-56 221.1 158 72.8
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 5.9e-56 221.1 158 72.8
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 7.8e-56 220.7 159 74.2
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 7.8e-56 220.7 155 72.9
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 7.8e-56 220.7 151 72.8
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.0e-55 220.3 155 73.5
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 1.3e-55 219.9 156 73.1
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 1.7e-55 219.5 160 73.1
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 2.3e-55 219.2 157 72.0
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 2.3e-55 219.2 157 71.3
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 3.9e-55 218.4 167 68.9
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 3.9e-55 218.4 155 71.0
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 5.0e-55 218.0 158 71.5
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 5.0e-55 218.0 160 72.5
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 5.0e-55 218.0 159 71.1
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 5.0e-55 218.0 161 71.4
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 8.6e-55 217.2 159 67.9
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 1.1e-54 216.9 164 70.1
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 1.1e-54 216.9 168 66.1
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.1e-54 216.9 155 70.3
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 1.1e-54 216.9 155 71.6
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.5e-54 216.5 142 78.9
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.5e-54 216.5 155 70.3
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 1.5e-54 216.5 155 70.3
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 1.9e-54 216.1 156 72.4
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 2.5e-54 215.7 154 71.4
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 2.5e-54 215.7 161 70.2
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 4.3e-54 214.9 158 70.3
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 7.3e-54 214.2 168 66.7
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 7.3e-54 214.2 157 70.1
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 7.3e-54 214.2 155 71.0
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.6e-53 213.0 155 69.7
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 1.6e-53 213.0 155 69.7
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 2.8e-53 212.2 162 69.1
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 2.8e-53 212.2 146 73.3
THA.LOC104817643 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 2.8e-53 212.2 153 69.3
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 3.6e-53 211.8 159 69.8
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 3.6e-53 211.8 146 74.7
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 4.7e-53 211.5 155 68.4
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 4.7e-53 211.5 153 71.9
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 6.1e-53 211.1 156 69.2
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 1.0e-52 210.3 134 77.6
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 1.8e-52 209.5 152 71.7
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 2.3e-52 209.1 160 66.9
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 2.0e-51 206.1 156 69.9
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 7.5e-51 204.1 120 79.2
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 9.8e-51 203.8 165 67.3
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 1.7e-50 203.0 158 70.9
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 2.2e-50 202.6 132 74.2
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 2.2e-50 202.6 132 74.2
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 3.7e-50 201.8 111 88.3
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 4.9e-50 201.4 111 83.8
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 4.9e-50 201.4 134 71.6
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 1.1e-49 200.3 115 78.3
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 1.9e-49 199.5 158 66.5
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 2.4e-49 199.1 160 65.0
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 4.1e-49 198.4 159 61.0
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 1.6e-48 196.4 161 65.2
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 1.6e-48 196.4 152 65.1
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 3.5e-48 195.3 111 82.0
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 4.6e-48 194.9 158 63.9
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 6.0e-48 194.5 111 80.2
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 1.3e-47 193.4 160 65.0
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 2.3e-47 192.6 111 80.2
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 3.0e-47 192.2 158 65.8
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 3.0e-47 192.2 162 64.8
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 3.9e-47 191.8 123 74.0
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 5.0e-47 191.4 162 64.8
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 5.0e-47 191.4 162 63.0
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 1.1e-46 190.3 160 62.5
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 3.3e-46 188.7 158 65.8
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 4.3e-46 188.3 158 66.5
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 8.1e-45 184.1 158 64.6
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 5.2e-44 181.4 111 72.1
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 1.2e-43 180.3 140 62.9
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 3.2e-41 172.2 104 76.0
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 3.2e-41 172.2 135 69.6
MBI11_g19461_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 9.2e-41 170.6 97 82.5
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 2.7e-40 169.1 97 80.4
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 9.5e-38 160.6 153 54.2
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 1.2e-35 153.7 105 67.6
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 2.0e-35 152.9 83 88.0
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 3.5e-32 142.1 83 79.5
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 5.2e-28 128.3 126 57.9
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 1.5e-27 126.7 121 52.9
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 7.6e-27 124.4 102 64.7
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 4.2e-25 118.6 99 63.6
Duzib160G0718 Durio zibethinus HOM05D004796 ORTHO05D006527 1.1e-17 94.0 154 37.7
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 5.3e-12 75.1 79 50.6
CBR_g8345 Chara braunii HOM05D004796 ORTHO05D034338 5.8e-11 71.6 94 41.5
MCO10G007 Micromonas commoda HOM05D004796 ORTHO05D034338 7.1e-09 64.7 114 31.6
Cre07.g322000 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D034338 7.9e-08 61.2 112 34.8
TAR369G0326 Trochodendron aralioides HOM05D005551 ORTHO05D007207 6.7e-07 58.2 93 38.7
Haze_26851 Corylus avellana HOM05D005551 ORTHO05D007207 8.7e-07 57.8 106 36.8
CARHR008380 Cardamine hirsuta HOM05D005551 ORTHO05D007207 1.9e-06 56.6 155 32.9
HPP92_019567 Vanilla planifolia HOM05D004796 ORTHO05D006527 1.9e-06 56.6 74 51.4
MSTRG.22962 Avicennia marina HOM05D005551 ORTHO05D007207 2.5e-06 56.2 142 31.7
Cfa010168 Carpinus fangiana HOM05D005551 ORTHO05D007207 3.3e-06 55.8 116 34.5
Migut.I00341 Erythranthe guttata HOM05D005551 ORTHO05D007207 3.3e-06 55.8 118 33.1
CsaV3_6G038690 Cucumis sativus L. HOM05D005551 ORTHO05D001189 5.6e-06 55.1 157 29.9
Sed0004770 Sechium edule HOM05D005551 ORTHO05D007207 7.4e-06 54.7 106 36.8
THA.LOC104816954 Tarenaya hassleriana HOM05D005551 ORTHO05D007207 9.6e-06 54.3 138 33.3


User provided reference genes

Program Settings