Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2873.2 1452 100.0
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2608.9 1382 94.7
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2344.7 1389 84.9
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2342.4 1388 84.7
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2276.5 1387 82.4
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2273.8 1384 82.1
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2261.5 1385 81.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2258.4 1386 80.8
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2255.7 1386 80.7
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2254.2 1385 81.7
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2254.2 1390 81.8
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2253.0 1388 81.6
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2252.6 1389 81.8
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2251.9 1389 81.4
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2251.1 1393 81.6
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2248.8 1381 81.8
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2246.1 1386 80.7
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2241.8 1385 81.5
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2240.3 1387 80.9
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2239.9 1389 81.5
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2239.5 1385 80.7
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2238.8 1395 80.9
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2238.0 1391 81.3
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2237.6 1391 81.2
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2237.2 1386 80.7
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2234.1 1387 80.1
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2233.0 1398 79.3
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2231.4 1397 80.1
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2231.1 1385 80.9
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2227.6 1387 80.5
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2225.3 1391 80.9
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2216.4 1412 79.0
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2215.7 1389 79.0
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2215.7 1422 79.1
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2213.3 1388 80.0
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2207.9 1390 79.0
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2207.6 1385 80.3
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2206.4 1388 79.9
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2203.3 1387 79.4
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2201.8 1384 79.9
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2194.1 1387 78.8
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2192.9 1388 78.5
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2191.4 1387 79.1
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2191.4 1386 78.3
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2191.0 1386 78.2
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1388 78.8
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2186.4 1386 78.1
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2180.2 1384 78.9
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2179.1 1398 78.7
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2175.6 1388 77.9
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2169.8 1347 81.1
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2169.8 1404 78.6
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2167.5 1374 77.9
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2160.2 1415 78.6
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2157.9 1399 77.8
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2155.9 1365 79.6
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2155.6 1431 76.2
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2154.8 1481 73.7
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2154.4 1382 78.0
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2148.2 1370 78.5
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2137.8 1388 77.4
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2114.7 1416 75.4
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2110.1 1395 76.5
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2109.7 1406 76.2
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2102.8 1405 76.0
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2099.3 1396 76.1
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2091.6 1484 71.9
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2089.3 1223 84.1
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2088.5 1390 75.7
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2087.8 1389 75.8
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2087.0 1390 75.7
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2087.0 1390 75.8
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2086.2 1390 75.5
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2083.9 1695 65.8
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2065.4 1253 81.9
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2062.0 1400 74.9
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2061.6 1362 76.4
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2030.0 1300 78.5
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1988.0 1349 73.8
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1987.2 1333 74.3
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1968.4 1349 73.5
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1942.5 1375 72.9
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1927.5 1397 71.0
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1927.1 1332 72.9
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1918.7 1372 70.2
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1904.4 1194 78.6
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1873.6 1373 69.0
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1835.8 1369 67.0
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1757.7 1529 61.4
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1602.0 973 84.5
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1506.1 927 80.4
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1487.2 1150 65.0
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1421.8 1382 53.0
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1362.4 812 83.9
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1342.0 1337 51.5
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1338.2 1361 50.6
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1329.3 1319 50.9
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1197.2 718 84.3
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1194.1 877 67.0
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1161.0 760 75.9
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1158.7 791 74.7
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1157.9 818 72.0
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 6.2e-280 968.4 859 55.6
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 3.4e-278 962.6 593 80.1
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 8.5e-245 851.7 596 73.0
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 4.4e-209 733.0 486 77.8
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 1.2e-198 698.4 505 68.7
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 3.4e-193 680.2 519 66.3
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 9.5e-188 662.1 1479 30.4
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 6.2e-155 553.1 538 56.1
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.1e-147 528.1 364 71.2
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.8e-139 501.1 527 52.2
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 5.1e-117 427.2 534 48.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.0e-101 376.3 226 77.9
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 8.3e-91 340.1 221 72.4
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.1e-86 325.5 203 77.8
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 6.2e-78 297.4 414 44.2
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 4.7e-62 244.6 147 82.3
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 2.3e-61 242.3 297 46.8
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 3.4e-52 211.8 139 74.8
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.9e-45 187.6 128 67.2
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 7.4e-39 167.5 116 75.0
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 3.8e-35 155.2 94 84.0
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.6e-33 149.8 133 66.9
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.3e-32 146.0 146 48.6
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 3.3e-31 142.1 89 73.0
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 5.6e-31 141.4 101 68.3
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 6.2e-30 137.9 83 81.9
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 5.3e-29 134.8 87 71.3
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 7.6e-28 131.0 239 40.6
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 7.6e-28 131.0 153 53.6
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.3e-27 130.2 112 57.1
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 6.5e-27 127.9 101 66.3
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 2.7e-25 122.5 120 55.8
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 2.1e-22 112.8 98 54.1
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 4.8e-22 111.7 121 50.4
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.4e-21 109.4 68 80.9
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.6e-17 95.5 53 88.7
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.0e-16 92.4 124 45.2
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 3.9e-16 92.0 114 50.9
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.3e-15 88.6 50 90.0
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 4.8e-14 85.1 87 46.0
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 6.3e-14 84.7 52 84.6
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 9.1e-13 80.9 45 91.1
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 5.9e-12 78.2 42 95.2
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 6.1e-09 68.2 44 79.5
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 6.1e-09 68.2 44 79.5
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 6.1e-09 68.2 44 79.5
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 6.1e-09 68.2 44 79.5
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 6.1e-09 68.2 44 79.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.8e-08 66.6 90 42.2
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 3.0e-08 65.9 56 55.4
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 3.0e-08 65.9 56 55.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 8.8e-08 64.3 43 76.7
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 8.8e-08 64.3 54 57.4


User provided reference genes

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