Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0447391 Helianthus annuus HOM05D002525 ORTHO05D002727 2.6e-71 271.9 135 100.0
HanXRQChr14g0462571 Helianthus annuus HOM05D002525 ORTHO05D002727 1.9e-50 202.6 111 91.9
Lsat_1_v5_gn_2_131421 Lactuca sativa HOM05D002525 ORTHO05D002727 1.1e-37 160.2 106 78.3
ECA238G3968 Erigeron canadensis HOM05D002525 ORTHO05D002727 5.1e-35 151.4 109 74.3
Cc02_g02270 Coffea canephora HOM05D002525 ORTHO05D002727 3.3e-34 148.7 109 67.0
CSS0005283 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 1.4e-32 143.3 116 62.1
Dinv28381 Davidia involucrata HOM05D002525 ORTHO05D002727 1.4e-32 143.3 123 61.0
Nitab4.5_0016317g0020 Nicotiana tabacum HOM05D002525 ORTHO05D002727 3.8e-30 135.2 101 65.3
Manes.14G021400 Manihot esculenta HOM05D002525 ORTHO05D002727 4.9e-30 134.8 116 57.8
MSTRG.27078 Avicennia marina HOM05D002525 ORTHO05D002727 8.4e-30 134.0 111 62.2
QL09p012476 Quercus lobata HOM05D002525 ORTHO05D002727 8.4e-30 134.0 119 56.3
DCAR_014523 Daucus carota HOM05D002525 ORTHO05D002727 1.4e-29 133.3 112 59.8
Potri.017G148600 Populus trichocarpa HOM05D002525 ORTHO05D002727 1.9e-29 132.9 116 59.5
Nitab4.5_0000472g0070 Nicotiana tabacum HOM05D002525 ORTHO05D002727 3.2e-29 132.1 117 59.8
Actinidia08587 Actinidia chinensis HOM05D002525 ORTHO05D002727 7.1e-29 131.0 112 65.2
Nitab4.5_0001331g0040 Nicotiana tabacum HOM05D002525 ORTHO05D002727 1.2e-28 130.2 105 62.9
Sopen03g003540 Solanum pennellii HOM05D002525 ORTHO05D002727 1.2e-28 130.2 105 61.0
Sopen06g012120 Solanum pennellii HOM05D002525 ORTHO05D002727 1.2e-28 130.2 101 63.4
TAR375G0662 Trochodendron aralioides HOM05D002525 ORTHO05D002727 1.6e-28 129.8 120 55.0
CAN.G126.37 Capsicum annuum HOM05D002525 ORTHO05D002727 2.1e-28 129.4 120 58.3
PGSC0003DMG401028895 Solanum tuberosum HOM05D002525 ORTHO05D002727 2.7e-28 129.0 101 63.4
Peaxi162Scf00444g00236 Petunia axillaris HOM05D002525 ORTHO05D002727 3.5e-28 128.6 124 55.6
Potri.004G072400 Populus trichocarpa HOM05D002525 ORTHO05D002727 3.5e-28 128.6 116 56.9
Solyc03g007590.4 Solanum lycopersicum HOM05D002525 ORTHO05D002727 3.5e-28 128.6 117 57.3
Migut.F00280 Erythranthe guttata HOM05D002525 ORTHO05D002727 7.8e-28 127.5 111 55.9
Lsat_1_v5_gn_8_6520 Lactuca sativa HOM05D002525 ORTHO05D002727 7.8e-28 127.5 93 67.7
Haze_00057 Corylus avellana HOM05D002525 ORTHO05D002727 1.0e-27 127.1 120 53.3
GSVIVG01028827001 Vitis vinifera HOM05D002525 ORTHO05D002727 1.7e-27 126.3 115 58.3
Cfa016300 Carpinus fangiana HOM05D002525 ORTHO05D002727 2.3e-27 125.9 120 53.3
Oeu032744.1 Olea europaea HOM05D002525 ORTHO05D002727 2.3e-27 125.9 101 60.4
Oeu049095.1 Olea europaea HOM05D002525 ORTHO05D002727 2.3e-27 125.9 105 58.1
SGA_v2.0_scaffold44G16756 Striga asiatica HOM05D002525 ORTHO05D002727 3.0e-27 125.6 121 56.2
CiPaw.05G261400 Carya illinoinensis HOM05D002525 ORTHO05D002727 5.1e-27 124.8 113 55.8
SalBow4G2719 Salvia bowleyana HOM05D002525 ORTHO05D002727 5.1e-27 124.8 101 59.4
COL.COLO4_30295 Corchorus olitorius HOM05D002525 ORTHO05D002727 6.6e-27 124.4 112 58.0
MD07G1279800 Malus domestica HOM05D002525 ORTHO05D002727 6.6e-27 124.4 118 59.3
Peaxi162Scf00618g00620 Petunia axillaris HOM05D002525 ORTHO05D002727 8.7e-27 124.0 107 59.8
Prupe.2G302100 Prunus persica HOM05D002525 ORTHO05D002727 8.7e-27 124.0 118 60.2
Sabra17G0123900 Salix brachista HOM05D002525 ORTHO05D002727 8.7e-27 124.0 116 56.9
Actinidia34163 Actinidia chinensis HOM05D002525 ORTHO05D002727 1.1e-26 123.6 117 59.8
CAN.G204.26 Capsicum annuum HOM05D002525 ORTHO05D002727 1.1e-26 123.6 101 60.4
Gorai.003G069200 Gossypium raimondii HOM05D002525 ORTHO05D002727 1.5e-26 123.2 113 58.4
Sc25g0000710 Simmondsia chinensis HOM05D002525 ORTHO05D002727 2.5e-26 122.5 116 51.7
Thecc.03G185700 Theobroma cacao HOM05D002525 ORTHO05D002727 3.3e-26 122.1 112 58.9
Gohir.A08G085500 Gossypium hirsutum HOM05D002525 ORTHO05D002727 5.6e-26 121.3 109 58.7
MD01G1209500 Malus domestica HOM05D002525 ORTHO05D002727 5.6e-26 121.3 118 58.5
Gohir.D11G228200 Gossypium hirsutum HOM05D002525 ORTHO05D002727 7.3e-26 120.9 113 58.4
Gorai.004G117000 Gossypium raimondii HOM05D002525 ORTHO05D002727 7.3e-26 120.9 109 58.7
Gohir.A11G225000 Gossypium hirsutum HOM05D002525 ORTHO05D002727 9.6e-26 120.6 109 59.6
ECA233G3789 Erigeron canadensis HOM05D002525 ORTHO05D002727 2.1e-25 119.4 94 66.0
Hma1.2p1_0327F.1_g126480 Hydrangea macrophylla HOM05D002525 ORTHO05D002727 2.1e-25 119.4 112 53.6
Rhsim03G0191900 Rhododendron simsii HOM05D002525 ORTHO05D002727 2.1e-25 119.4 115 58.3
Duzib205G1599 Durio zibethinus HOM05D002525 ORTHO05D002727 2.8e-25 119.0 109 58.7
FAN10G3931 Fragaria x ananassa HOM05D002525 ORTHO05D002727 2.8e-25 119.0 118 57.6
Gohir.D08G109300 Gossypium hirsutum HOM05D002525 ORTHO05D002727 2.8e-25 119.0 109 57.8
Ah.07g206470 Amaranthus hybridus HOM05D002525 ORTHO05D002727 3.6e-25 118.6 116 54.3
TWI23G0431 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 4.8e-25 118.2 112 55.4
FAN03G3427 Fragaria x ananassa HOM05D002525 ORTHO05D002727 8.1e-25 117.5 118 57.6
Sabra04G0047700 Salix brachista HOM05D002525 ORTHO05D002727 8.1e-25 117.5 116 54.3
TWI14G1392 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 8.1e-25 117.5 116 52.6
FAN10G2067 Fragaria x ananassa HOM05D002525 ORTHO05D002727 1.1e-24 117.1 118 56.8
MSTRG.8478 Avicennia marina HOM05D002525 ORTHO05D002727 1.8e-24 116.3 113 55.8
SGA_v2.0_scaffold60G21118 Striga asiatica HOM05D002525 ORTHO05D002727 3.1e-24 115.5 121 52.1
EL10Ac3g05402 Beta vulgaris HOM05D002525 ORTHO05D002727 4.0e-24 115.2 115 51.3
Hund04794 Selenicereus undatus HOM05D002525 ORTHO05D002727 6.9e-24 114.4 111 54.1
RcHm_v2.0_Chr1g0378561 Rosa chinensis HOM05D002525 ORTHO05D002727 1.2e-23 113.6 118 55.1
Ciclev10004809m.g Citrus clementina HOM05D002525 ORTHO05D002727 2.6e-23 112.5 116 52.6
Cpa.g.sc107.123 Carica papaya HOM05D002525 ORTHO05D002727 3.4e-23 112.1 111 55.0
AUR62031435 Chenopodium quinoa HOM05D002525 ORTHO05D002727 3.4e-23 112.1 111 53.2
FvH4_7g30410 Fragaria vesca HOM05D002525 ORTHO05D002727 3.4e-23 112.1 114 56.1
FAN01G2222 Fragaria x ananassa HOM05D002525 ORTHO05D002727 3.4e-23 112.1 114 56.1
Lj1A1006G37 Lonicera japonica HOM05D002525 ORTHO05D002727 3.4e-23 112.1 118 55.9
FAN06G0126 Fragaria x ananassa HOM05D002525 ORTHO05D002727 4.5e-23 111.7 114 56.1
FAN06G4058 Fragaria x ananassa HOM05D002525 ORTHO05D002727 4.5e-23 111.7 114 56.1
Aqoxy7G00199 Aquilegia oxysepala HOM05D002525 ORTHO05D002727 9.9e-23 110.5 104 57.7
CANSAT21G1266 Cannabis sativa HOM05D002525 ORTHO05D002727 1.3e-22 110.2 117 50.4
TWI39G0615 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 1.3e-22 110.2 113 53.1
Lj2g0008696 Lotus japonicus HOM05D002525 ORTHO05D002727 1.7e-22 109.8 121 47.9
Nn1g01679 Nelumbo nucifera HOM05D002525 ORTHO05D002727 1.7e-22 109.8 115 53.9
AUR62021105 Chenopodium quinoa HOM05D002525 ORTHO05D002727 2.9e-22 109.0 120 51.7
unitig_46.g18808 Utricularia gibba HOM05D002525 ORTHO05D002727 3.8e-22 108.6 101 54.5
PGR042G0902 Punica granatum HOM05D002525 ORTHO05D002727 4.9e-22 108.2 111 52.3
vmacro06618 Vaccinium macrocarpon HOM05D002525 ORTHO05D002727 1.1e-21 107.1 120 51.7
VMungo0464G0872 Vigna mungo HOM05D002525 ORTHO05D002727 1.4e-21 106.7 121 47.9
Lalb_Chr21g0305281 Lupinus albus HOM05D002525 ORTHO05D002727 1.9e-21 106.3 118 48.3
ClCG05G008470 Citrullus lanatus HOM05D002525 ORTHO05D002727 4.2e-21 105.1 101 52.5
Glyma.09G129500 Glycine max HOM05D002525 ORTHO05D002727 4.2e-21 105.1 119 49.6
Eucgr.A02721 Eucalyptus grandis HOM05D002525 ORTHO05D002727 5.4e-21 104.8 91 59.3
CsaV3_3G017550 Cucumis sativus L. HOM05D002525 ORTHO05D002727 1.6e-20 103.2 111 50.5
MELO3C006952.2 Cucumis melo HOM05D002525 ORTHO05D002727 2.7e-20 102.4 111 49.5
Psat0s2905g0040 Pisum sativum HOM05D002525 ORTHO05D002727 7.9e-20 100.9 116 46.6
arahy.Tifrunner.gnm1.ann1.QBZ9GT Arachis hypogaea HOM05D002525 ORTHO05D002727 1.0e-19 100.5 122 46.7
Sed0017638 Sechium edule HOM05D002525 ORTHO05D002727 1.8e-19 99.8 110 45.5
Glyma.16G177400 Glycine max HOM05D002525 ORTHO05D002727 3.9e-19 98.6 119 47.9
Medtr6g052360 Medicago truncatula HOM05D002525 ORTHO05D002727 1.5e-18 96.7 118 45.8
PSO266G0052 Papaver somniferum HOM05D002525 ORTHO05D002727 7.4e-18 94.4 91 53.8
Phvul.004G106100 Phaseolus vulgaris HOM05D002525 ORTHO05D002727 7.4e-18 94.4 108 48.1
TPR.G9163 Trifolium pratense HOM05D002525 ORTHO05D002727 7.4e-18 94.4 118 43.2
PSO478G0963 Papaver somniferum HOM05D002525 ORTHO05D002727 1.3e-17 93.6 92 53.3
MBI01_g17607_MAGBIO Magnolia biondii HOM05D002525 ORTHO05D002727 1.1e-16 90.5 119 45.4
Lalb_Chr19g0130551 Lupinus albus HOM05D002525 ORTHO05D002727 1.4e-16 90.1 121 42.1
HPP92_006433 Vanilla planifolia HOM05D002525 ORTHO05D002727 2.0e-15 86.3 85 49.4
THA.LOC104814929 Tarenaya hassleriana HOM05D002525 ORTHO05D002727 2.6e-15 85.9 125 42.4
AT3G49140 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 3.4e-15 85.5 127 40.2
AL5G28840 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 1.3e-14 83.6 133 39.8
Carub.0005s1537 Capsella rubella HOM05D002525 ORTHO05D002727 1.3e-14 83.6 95 44.2
AagrBONN_evm.TU.Sc2ySwM_368.300 Anthoceros agrestis HOM05D002525 ORTHO05D002727 1.7e-14 83.2 98 44.9
Thhalv10004068m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 2.9e-14 82.4 125 38.4
Zm00001eb197710 Zea mays HOM05D002525 ORTHO05D002727 4.9e-14 81.6 86 46.5
CARHR189530 Cardamine hirsuta HOM05D002525 ORTHO05D002727 1.4e-13 80.1 118 39.8
Aa31LG4G17600 Aethionema arabicum HOM05D002525 ORTHO05D010173 1.9e-13 79.7 102 43.1
Sp2g23260 Schrenkiella parvula HOM05D002525 ORTHO05D002727 2.4e-13 79.3 119 40.3
AL6G35410 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 5.5e-13 78.2 93 45.2
Thhalv10010311m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 5.5e-13 78.2 104 40.4
CARHR157980 Cardamine hirsuta HOM05D002525 ORTHO05D002727 1.6e-12 76.6 96 42.7
AT5G24060 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 2.1e-12 76.3 90 43.3
CDE02G4087 Ceratophyllum demersum HOM05D002525 ORTHO05D002727 2.1e-12 76.3 90 44.4
Nitab4.5_0004854g0050 Nicotiana tabacum HOM05D002525 ORTHO05D002727 2.1e-12 76.3 50 72.0
BcaNung01205 Brassica carinata HOM05D002525 ORTHO05D002727 6.0e-12 74.7 89 47.2
A06p18590 Brassica napus HOM05D002525 ORTHO05D002727 6.0e-12 74.7 120 37.5
BraA06t24937Z Brassica rapa HOM05D002525 ORTHO05D002727 6.0e-12 74.7 120 37.5
Sp5g12940 Schrenkiella parvula HOM05D002525 ORTHO05D002727 7.9e-12 74.3 106 40.6
Carub.0006s2178 Capsella rubella HOM05D002525 ORTHO05D002727 1.8e-11 73.2 116 41.4
C07p43670 Brassica napus HOM05D002525 ORTHO05D007180 2.3e-11 72.8 95 47.4
C08p24130 Brassica napus HOM05D002525 ORTHO05D002727 2.3e-11 72.8 108 39.8
BolC7t44897H Brassica oleracea HOM05D002525 ORTHO05D002727 2.3e-11 72.8 95 47.4
BolC8t50034H Brassica oleracea HOM05D002525 ORTHO05D002727 2.3e-11 72.8 108 39.8
A06p34830 Brassica napus HOM05D002525 ORTHO05D007180 3.9e-11 72.0 104 44.2
BraA06t26410Z Brassica rapa HOM05D002525 ORTHO05D002727 3.9e-11 72.0 104 44.2
BcaB05g22963 Brassica carinata HOM05D002525 ORTHO05D002727 6.7e-11 71.2 104 38.5
Nn6g32107 Nelumbo nucifera HOM05D002525 ORTHO05D002727 8.7e-11 70.9 94 44.7
BcaNung01826 Brassica carinata HOM05D002525 ORTHO05D002727 1.9e-10 69.7 119 41.2
AL5G28710 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 2.1e-09 66.2 128 37.5
AL5G28730 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 2.1e-09 66.2 128 37.5
AL5G28790 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 2.1e-09 66.2 128 37.5
Pp3c17_19250 Physcomitrium patens HOM05D002525 ORTHO05D002727 3.1e-08 62.4 120 35.8
Os01g0899500 Oryza sativa ssp. japonica HOM05D002525 ORTHO05D002727 6.9e-08 61.2 132 31.1
CSS0013153 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 9.0e-08 60.8 60 51.7
Mapoly0002s0015 Marchantia polymorpha HOM05D002525 ORTHO05D002727 9.0e-08 60.8 126 34.1
ATR0743G277 Amborella trichopoda HOM05D002525 ORTHO05D002727 1.2e-07 60.5 71 42.3
CDE09G0420 Ceratophyllum demersum HOM05D002525 ORTHO05D002727 3.4e-07 58.9 83 36.1
PSO675G4209 Papaver somniferum HOM05D002525 ORTHO05D002727 3.4e-07 58.9 75 44.0
QL09p012520 Quercus lobata HOM05D002525 ORTHO05D002727 4.5e-07 58.5 67 47.8
PSO017G7186 Papaver somniferum HOM05D002525 ORTHO05D002727 5.8e-07 58.2 75 44.0
HPP92_005391 Vanilla planifolia HOM05D002525 ORTHO05D002727 1.0e-06 57.4 91 37.4
TAR362G1149 Trochodendron aralioides HOM05D002525 ORTHO05D002727 6.5e-06 54.7 95 34.7
ClCG07G016560 Citrullus lanatus HOM05D002525 ORTHO05D002727 8.4e-06 54.3 75 38.7
Zm00001eb144530 Zea mays HOM05D002525 ORTHO05D002727 8.4e-06 54.3 134 32.1


User provided reference genes

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