Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 8.2e-175 617.1 341 100.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.5e-155 553.1 288 93.4
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.5e-147 526.6 286 88.5
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.4e-142 510.0 276 88.0
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 7.8e-133 477.6 288 79.2
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 3.3e-131 472.2 262 84.7
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 4.3e-131 471.9 292 78.1
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 5.6e-131 471.5 288 79.2
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.6e-130 468.8 292 77.4
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 6.2e-130 468.0 281 78.6
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 8.1e-130 467.6 267 82.0
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 8.1e-130 467.6 266 83.1
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 2.3e-129 466.1 280 79.6
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.3e-129 466.1 266 83.1
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.3e-129 466.1 266 82.7
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 3.1e-129 465.7 262 83.6
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 4.0e-129 465.3 285 78.6
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 5.2e-129 464.9 265 82.3
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 6.8e-129 464.5 287 78.0
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 6.8e-129 464.5 265 82.3
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.2e-128 463.8 292 76.7
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.5e-128 463.4 289 77.2
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 2.6e-128 462.6 266 82.0
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 7.6e-128 461.1 267 80.5
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 7.6e-128 461.1 300 75.7
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 9.9e-128 460.7 265 81.1
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 9.9e-128 460.7 265 81.9
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.2e-127 459.5 313 70.9
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 3.7e-127 458.8 266 81.6
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 4.9e-127 458.4 269 80.7
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.1e-126 457.2 300 75.0
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.4e-126 456.8 284 76.4
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.4e-126 456.8 281 78.3
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.9e-126 456.4 264 80.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.4e-126 456.1 264 79.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 2.4e-126 456.1 264 81.1
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 2.4e-126 456.1 285 76.1
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.2e-126 455.7 285 77.2
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 4.1e-126 455.3 289 75.4
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 4.1e-126 455.3 266 80.1
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 4.1e-126 455.3 266 80.1
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.4e-126 454.9 266 79.7
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.1e-126 454.5 285 76.8
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 7.1e-126 454.5 264 79.2
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 9.2e-126 454.1 266 79.7
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-125 453.8 289 75.8
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.2e-125 453.8 261 81.2
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.6e-125 453.4 264 79.9
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.6e-125 453.4 264 79.9
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.6e-125 453.4 295 73.9
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.6e-125 453.4 266 81.2
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 2.7e-125 452.6 264 80.3
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.7e-125 452.6 295 73.9
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.5e-125 452.2 264 79.9
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 3.5e-125 452.2 276 78.6
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 3.5e-125 452.2 286 76.2
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 3.5e-125 452.2 293 74.4
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.6e-125 451.8 296 73.0
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 6.0e-125 451.4 264 80.3
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 6.0e-125 451.4 289 75.4
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 7.8e-125 451.1 266 80.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.3e-124 450.3 289 75.4
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.7e-124 449.9 264 80.7
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 5.1e-124 448.4 290 74.8
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.1e-124 448.4 264 79.5
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 6.6e-124 448.0 275 78.5
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 6.6e-124 448.0 284 75.7
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 6.6e-124 448.0 258 81.4
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-123 447.2 287 74.6
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.5e-123 446.8 264 79.2
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.5e-123 446.8 259 81.1
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.9e-123 446.4 264 79.2
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.5e-123 446.0 273 76.9
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.5e-123 446.0 273 76.9
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.5e-123 446.0 294 72.8
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-123 445.7 287 74.9
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.3e-123 445.7 267 79.0
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.3e-123 445.7 273 76.9
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 5.6e-123 444.9 287 74.9
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 5.6e-123 444.9 264 80.3
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 5.6e-123 444.9 264 79.2
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 7.3e-123 444.5 287 74.6
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 9.6e-123 444.1 295 73.6
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.2e-122 443.7 294 73.1
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.6e-122 443.4 291 73.9
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.6e-122 443.4 261 81.2
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 2.1e-122 443.0 273 76.9
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.8e-122 442.6 267 78.7
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 3.6e-122 442.2 287 73.9
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 3.6e-122 442.2 287 73.9
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 3.6e-122 442.2 289 73.7
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 6.2e-122 441.4 295 72.9
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 6.2e-122 441.4 291 71.8
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.8e-121 439.9 286 72.7
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.8e-121 439.9 295 74.9
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.8e-121 439.9 295 74.9
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 3.1e-121 439.1 297 70.4
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-120 437.2 286 72.4
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.2e-120 437.2 286 72.4
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-120 437.2 286 72.4
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.2e-120 437.2 260 78.1
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.5e-120 436.8 264 78.4
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.0e-120 436.4 267 77.9
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 3.4e-120 435.6 290 72.4
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 2.2e-119 433.0 241 83.8
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 3.8e-119 432.2 287 72.1
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 3.8e-119 432.2 287 72.5
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 4.9e-119 431.8 243 83.5
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 8.4e-119 431.0 292 71.6
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.1e-118 430.6 290 71.4
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 5.4e-118 428.3 287 72.1
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-117 427.2 285 71.2
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 3.5e-117 425.6 286 69.9
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.0e-116 424.1 289 71.3
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.7e-116 423.3 258 77.9
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 5.1e-116 421.8 301 68.4
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 3.6e-114 415.6 261 75.5
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.6e-114 415.6 242 82.2
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.9e-110 403.3 269 72.1
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 4.2e-110 402.1 248 79.0
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.6e-109 400.2 271 70.8
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 6.0e-109 398.3 222 83.8
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.1e-106 389.8 220 81.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 6.9e-105 384.8 218 80.7
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.6e-104 382.9 286 65.4
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.3e-103 380.6 222 80.6
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 2.9e-103 379.4 229 78.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 4.9e-103 378.6 215 81.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.1e-102 377.5 270 66.3
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 4.2e-102 375.6 301 63.1
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 2.1e-98 363.2 209 81.8
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 2.8e-98 362.8 285 61.4
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 2.9e-95 352.8 219 74.4
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 6.0e-93 345.1 230 73.9
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.8e-89 333.6 303 56.1
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 3.6e-77 292.7 290 52.1
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.2e-72 277.7 163 79.8
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.2e-71 273.5 202 67.3
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 2.1e-69 266.9 219 62.6
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 2.3e-68 263.5 153 81.0
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.0e-64 250.4 187 65.2
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 7.7e-64 248.4 150 77.3
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.3e-63 247.7 146 82.2
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.7e-61 240.0 164 71.3
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.4e-60 237.7 152 75.7
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 2.8e-50 203.4 127 74.0
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.8e-49 200.7 148 65.5
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 5.2e-36 156.0 160 54.4
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.8e-21 107.1 108 57.4
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.1e-17 95.1 65 72.3
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 1.5e-14 84.7 49 77.6
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 3.4e-11 73.6 64 56.2
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 4.4e-11 73.2 68 54.4


User provided reference genes

Program Settings