Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 6.5e-238 827.0 420 100.0
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 2.7e-191 672.2 420 81.7
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 7.5e-178 627.5 430 77.2
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 6.6e-142 508.1 421 63.2
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 2.4e-139 499.6 419 61.8
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.5e-138 495.4 425 62.6
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.2e-137 493.0 423 60.0
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 3.8e-137 492.3 413 60.8
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-136 490.3 419 62.1
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.9e-136 490.0 426 61.0
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-136 490.0 425 61.6
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 7.1e-136 488.0 423 61.5
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.2e-135 487.3 427 59.5
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.2e-135 487.3 419 61.1
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.2e-135 487.3 428 60.7
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.6e-135 486.9 374 64.7
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.6e-135 486.9 425 59.3
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.6e-135 486.9 418 59.3
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.1e-135 486.5 429 59.7
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.5e-135 485.7 409 61.4
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 3.5e-135 485.7 339 71.4
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.6e-135 485.3 418 61.5
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.0e-134 484.2 417 61.6
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 1.8e-134 483.4 420 58.3
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.8e-134 483.4 427 59.5
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 3.0e-134 482.6 428 59.8
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.7e-134 481.1 425 61.6
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.1e-133 480.7 411 61.6
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 1.9e-133 479.9 384 63.5
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.3e-133 479.2 420 57.9
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 4.3e-133 478.8 429 60.1
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 5.6e-133 478.4 418 60.0
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 9.6e-133 477.6 417 59.7
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.3e-132 477.2 413 58.4
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.6e-132 476.9 377 63.4
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.4e-131 473.8 416 59.4
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.1e-131 472.6 426 57.7
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 3.1e-131 472.6 421 59.6
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 6.9e-131 471.5 421 59.6
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 4.5e-130 468.8 427 58.8
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 7.6e-130 468.0 424 59.2
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 1.3e-129 467.2 420 59.3
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.3e-129 467.2 378 63.2
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 2.2e-129 466.5 379 62.5
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 4.9e-129 465.3 414 60.1
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 8.4e-129 464.5 425 59.5
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 1.9e-128 463.4 424 58.5
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 9.3e-128 461.1 429 55.9
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 9.3e-128 461.1 346 65.9
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 9.3e-128 461.1 417 57.8
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.2e-127 460.7 425 58.4
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 1.6e-127 460.3 416 56.7
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 6.0e-127 458.4 425 56.0
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 6.0e-127 458.4 353 63.2
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 7.9e-127 458.0 426 57.7
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 1.0e-126 457.6 390 61.8
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.3e-126 457.2 428 55.8
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 1.3e-126 457.2 429 55.5
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.8e-126 456.8 453 55.4
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 5.1e-126 455.3 451 55.4
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 2.5e-125 453.0 427 57.4
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 4.3e-125 452.2 380 61.6
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 4.3e-125 452.2 353 62.9
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 4.3e-125 452.2 425 57.2
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 5.6e-125 451.8 426 55.4
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 5.6e-125 451.8 430 55.3
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 5.6e-125 451.8 396 58.8
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 5.6e-125 451.8 355 63.1
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 7.4e-125 451.4 353 62.3
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.6e-124 450.3 426 55.9
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 8.2e-124 448.0 431 54.3
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 8.2e-124 448.0 422 56.2
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.1e-123 447.6 380 61.3
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 1.1e-123 447.6 382 59.4
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.8e-123 446.8 419 58.7
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 4.0e-123 445.7 434 53.5
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 6.9e-123 444.9 433 54.3
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 4.5e-122 442.2 399 56.4
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.3e-121 440.7 424 54.5
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 2.5e-120 436.4 413 56.9
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 5.5e-120 435.3 413 56.4
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 5.5e-120 435.3 352 61.4
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 4.6e-119 432.2 375 59.7
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.3e-118 430.6 415 55.7
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.3e-117 426.0 367 58.3
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 5.7e-117 425.2 374 58.6
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.3e-115 418.7 415 54.5
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 9.0e-115 417.9 411 55.0
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 1.2e-114 417.5 511 47.7
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 1.0e-113 414.5 335 60.0
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.0e-113 414.5 421 53.2
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 1.1e-112 411.0 377 56.5
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 4.2e-112 409.1 420 53.1
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 4.2e-112 409.1 416 54.8
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 4.6e-111 405.6 408 54.9
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 2.3e-110 403.3 335 59.4
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 6.7e-110 401.7 447 51.2
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 3.7e-108 396.0 371 55.3
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 2.4e-107 393.3 362 57.5
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 4.5e-106 389.0 422 51.2
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.3e-100 370.9 399 52.4
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.4e-99 367.5 447 49.7
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 6.1e-95 352.1 254 65.7
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 1.4e-67 261.2 399 40.1
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.5e-66 256.1 218 59.2
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 3.9e-57 226.5 143 78.3
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 4.7e-55 219.5 157 63.7
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 1.2e-53 214.9 247 47.0
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 2.3e-46 190.7 296 40.2
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 4.0e-46 189.9 240 46.2
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 7.8e-42 175.6 208 48.6
Oeu010081.1 Olea europaea HOM05D003094 ORTHO05D003482 7.6e-37 159.1 138 55.8
Mapoly0002s0206 Marchantia polymorpha HOM05D003094 ORTHO05D003482 1.1e-30 138.7 104 64.4
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 2.4e-30 137.5 97 68.0
Gohir.A06G136104 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-26 125.2 101 62.4
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 2.8e-23 114.0 227 36.6
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 2.0e-21 107.8 99 54.5
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 7.6e-21 105.9 169 40.8
Gorai.011G161100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-19 102.1 78 60.3
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 2.4e-19 100.9 85 61.2
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.2e-19 100.1 117 50.4
Gohir.D10G144200 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.3e-19 99.0 78 57.7
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-18 98.2 117 52.1
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.5e-18 97.1 217 35.0
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.3e-16 90.5 123 49.6
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 7.4e-16 89.4 150 41.3
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 1.3e-15 88.6 153 41.8
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-15 87.8 84 58.3
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 2.8e-15 87.4 84 58.3
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 3.7e-15 87.0 148 38.5
Nn3g17957 Nelumbo nucifera HOM05D003094 ORTHO05D003482 3.7e-15 87.0 77 53.2
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-14 85.5 73 61.6
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-14 84.3 72 61.1
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.9e-14 82.8 73 60.3
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.8e-13 79.7 73 60.3
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.7e-12 78.2 178 35.4
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 4.2e-11 73.6 160 32.5
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.6e-10 71.6 140 37.9
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.5e-10 70.5 150 36.7
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 1.3e-09 68.6 145 35.2
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 8.7e-09 65.9 145 33.1
Aqoxy1G00910 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 1.5e-08 65.1 110 40.9
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.9e-08 64.7 136 36.8
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 3.3e-08 63.9 151 34.4
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.3e-08 63.5 82 46.3
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 7.4e-08 62.8 114 39.5
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.6e-08 62.4 82 45.1
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.6e-08 62.4 82 45.1
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.3e-07 62.0 117 35.0
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 1.3e-07 62.0 100 41.0
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-07 60.8 151 33.8
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 4.8e-07 60.1 76 47.4
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.8e-07 60.1 145 35.2
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.4e-06 58.5 121 33.9
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 1.4e-06 58.5 107 37.4
MCO03G327 Micromonas commoda HOM05D003094 ORTHO05D003482 1.4e-06 58.5 134 32.1
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 3.1e-06 57.4 131 34.4
BcaC08g46948 Brassica carinata HOM05D003094 ORTHO05D003482 4.0e-06 57.0 71 42.3
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 4.0e-06 57.0 159 37.7
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 4.0e-06 57.0 137 34.3
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 5.3e-06 56.6 140 32.9
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 5.3e-06 56.6 147 38.8
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 6.9e-06 56.2 108 38.9
Nitab4.5_0008639g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002324 9.0e-06 55.8 59 45.8


User provided reference genes

Program Settings