Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 5.2e-254 880.6 440 100.0
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.1e-209 731.1 441 82.8
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 5.1e-209 731.1 442 82.1
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.0e-189 666.0 432 75.7
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 5.1e-185 651.4 430 74.0
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 8.1e-183 644.0 438 73.5
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.8e-180 635.2 437 72.3
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 6.4e-180 634.4 437 73.2
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 8.4e-180 634.0 442 71.0
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 8.4e-180 634.0 438 71.2
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.1e-179 633.6 440 72.3
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 4.6e-178 628.2 467 68.5
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.0e-177 627.1 440 71.4
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.8e-177 626.3 442 70.8
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.3e-177 625.9 442 71.0
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 2.3e-177 625.9 437 70.3
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 2.3e-177 625.9 437 70.5
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 5.1e-177 624.8 442 70.8
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 8.7e-177 624.0 443 70.2
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 3.3e-176 622.1 437 70.0
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.3e-176 622.1 442 70.4
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 4.3e-176 621.7 437 70.0
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 3.7e-175 618.6 443 69.5
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 6.2e-175 617.8 481 66.5
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 2.4e-174 615.9 442 71.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.4e-174 615.9 437 69.6
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 2.4e-174 615.9 441 69.8
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 3.1e-174 615.5 436 70.6
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.2e-173 613.6 437 69.3
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.2e-173 613.6 440 69.8
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 5.8e-173 611.3 433 69.3
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 7.6e-173 610.9 442 69.5
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 9.9e-173 610.5 438 68.7
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 9.9e-173 610.5 437 70.3
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 2.2e-172 609.4 440 68.2
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.8e-172 608.6 439 69.2
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 8.4e-172 607.4 436 69.7
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 8.4e-172 607.4 432 68.1
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 3.2e-171 605.5 443 68.4
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 4.2e-171 605.1 438 68.9
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 2.1e-170 602.8 435 69.0
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 3.5e-170 602.1 434 69.4
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 4.6e-170 601.7 435 69.0
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 7.9e-170 600.9 442 67.0
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 1.3e-169 600.1 439 67.7
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.3e-169 600.1 433 68.8
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.8e-169 599.7 441 68.3
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 3.0e-169 599.0 442 67.6
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 3.9e-169 598.6 442 66.7
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 6.7e-169 597.8 433 69.1
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.1e-168 597.0 441 66.0
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 2.5e-168 595.9 433 68.4
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 3.3e-168 595.5 432 68.3
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 3.3e-168 595.5 437 68.0
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 5.6e-168 594.7 432 68.5
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 7.4e-168 594.3 434 68.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 7.4e-168 594.3 433 68.1
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 3.7e-167 592.0 437 68.9
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 4.8e-167 591.7 434 66.8
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 6.2e-167 591.3 433 68.6
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.0e-166 588.6 445 66.1
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.3e-164 583.6 434 67.5
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 2.2e-164 582.8 432 67.8
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.5e-163 579.3 475 63.6
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 4.2e-163 578.6 418 68.4
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 1.0e-161 573.9 441 64.6
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 2.3e-161 572.8 477 61.8
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 2.3e-161 572.8 445 66.1
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.9e-160 569.7 431 66.1
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.5e-160 569.3 434 65.2
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 3.3e-160 568.9 418 67.7
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 3.3e-160 568.9 520 58.5
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.2e-159 566.2 440 64.8
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.1e-158 562.0 437 65.9
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 5.3e-158 561.6 476 61.6
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 5.3e-158 561.6 436 65.4
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 5.3e-158 561.6 438 66.9
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 5.3e-158 561.6 528 56.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 6.9e-158 561.2 434 66.1
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 6.9e-158 561.2 436 65.1
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 2.6e-157 559.3 440 64.1
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.9e-157 558.1 367 75.2
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.1e-155 553.9 434 65.4
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.4e-155 550.8 437 65.0
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.0e-153 547.4 437 64.5
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 2.3e-153 546.2 455 61.5
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.4e-150 537.0 432 66.0
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.7e-146 522.7 447 60.9
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 8.8e-145 517.7 423 62.4
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.7e-144 515.0 364 71.4
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.0e-140 504.2 376 67.3
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 3.2e-139 499.2 421 62.5
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 4.2e-139 498.8 384 65.4
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.7e-138 496.1 382 64.9
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 4.7e-138 495.4 440 59.5
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 7.4e-136 488.0 383 64.2
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 6.5e-132 474.9 448 56.9
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 8.5e-132 474.6 445 54.4
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 3.6e-130 469.2 705 42.1
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 6.1e-130 468.4 729 40.1
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 4.8e-127 458.8 364 64.8
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 4.7e-122 442.2 436 51.1
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 4.4e-120 435.6 448 49.8
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.4e-118 428.7 321 67.3
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.2e-114 417.5 303 69.0
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 3.6e-114 416.0 342 64.6
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 3.6e-114 416.0 299 71.2
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 3.0e-113 412.9 341 62.2
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.4e-110 404.1 448 50.0
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 3.4e-96 356.3 350 52.6
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 3.3e-91 339.7 222 77.5
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.9e-83 313.9 248 65.3
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.9e-79 300.1 222 68.5
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 3.3e-67 260.0 236 61.4
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.2e-64 251.5 161 76.4
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.6e-64 250.4 432 35.6
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 2.1e-61 240.7 282 50.7
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 7.4e-59 232.3 214 59.3
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.2e-56 224.9 159 67.9
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.6e-56 223.8 435 35.4
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.5e-53 213.4 134 79.9
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 7.4e-51 205.7 136 71.3
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 5.8e-48 196.1 141 66.7
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 6.3e-42 176.0 324 34.9
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 5.5e-38 162.9 143 58.0
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 2.0e-35 154.5 203 45.8
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 4.3e-35 153.3 196 46.9
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.8e-33 147.9 152 50.7
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.8e-26 124.0 109 56.0
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 4.1e-25 120.2 79 72.2
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 3.6e-21 107.1 56 80.4
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 4.7e-21 106.7 99 53.5
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.5e-19 101.7 75 64.0
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 5.7e-19 99.8 75 64.0
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 3.7e-18 97.1 75 62.7
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 8.2e-18 95.9 148 43.9
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 6.1e-13 79.7 44 81.8
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.0e-12 79.0 85 43.5
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 1.8e-09 68.2 59 62.7
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.2e-08 65.5 43 65.1
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 4.2e-06 57.0 59 52.5


User provided reference genes

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