Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.7e-63 245.7 119 100.0
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.1e-52 209.9 119 83.2
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 6.0e-48 194.1 121 81.8
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 4.2e-33 144.8 116 65.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.5e-33 144.4 117 65.0
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 9.3e-33 143.7 117 65.0
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 9.3e-33 143.7 116 64.7
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.0e-32 141.0 116 63.8
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.8e-31 139.4 115 63.5
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 5.1e-31 137.9 116 62.1
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 8.7e-31 137.1 116 62.1
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.9e-30 136.0 95 72.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.5e-30 135.6 116 59.5
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 3.3e-30 135.2 119 60.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 7.4e-30 134.0 116 60.3
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.6e-29 132.9 115 61.7
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.1e-29 132.5 116 59.5
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.8e-29 132.1 104 63.5
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 4.8e-29 131.3 116 59.5
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.4e-28 129.8 119 57.1
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.8e-28 129.4 116 58.6
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.4e-28 129.0 145 52.4
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 5.3e-28 127.9 116 60.3
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 5.3e-28 127.9 113 59.3
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 6.9e-28 127.5 99 64.6
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 6.9e-28 127.5 113 59.3
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.2e-27 126.7 116 56.9
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.5e-27 126.3 116 59.5
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.0e-27 125.9 116 55.2
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 2.0e-27 125.9 115 58.3
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 2.0e-27 125.9 112 57.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.0e-27 125.9 104 63.5
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.6e-27 125.6 99 62.6
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.6e-27 125.6 99 62.6
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.6e-27 125.6 99 62.6
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.6e-27 125.6 117 59.0
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 3.4e-27 125.2 99 63.6
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 3.4e-27 125.2 117 56.4
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.5e-27 124.8 116 57.8
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 5.8e-27 124.4 115 57.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 7.6e-27 124.0 104 61.5
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.7e-26 122.9 115 56.5
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.2e-26 122.5 115 54.8
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.2e-26 122.5 117 56.4
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.2e-26 122.5 104 61.5
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.2e-26 122.5 117 55.6
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.9e-26 122.1 114 53.5
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.9e-26 122.1 117 56.4
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 3.8e-26 121.7 117 55.6
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 5.0e-26 121.3 92 63.0
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 5.0e-26 121.3 88 69.3
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 5.0e-26 121.3 88 69.3
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 5.0e-26 121.3 112 56.2
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 5.0e-26 121.3 116 55.2
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 6.5e-26 120.9 102 65.7
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 6.5e-26 120.9 104 62.5
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 6.5e-26 120.9 112 57.1
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 6.5e-26 120.9 89 66.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 8.4e-26 120.6 115 57.4
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 8.4e-26 120.6 116 56.0
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 8.4e-26 120.6 104 60.6
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.1e-25 120.2 113 58.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.1e-25 120.2 108 56.5
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.1e-25 120.2 116 57.8
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.1e-25 120.2 116 58.6
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.4e-25 119.8 117 55.6
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.4e-25 119.8 122 55.7
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.4e-25 119.8 116 53.4
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.4e-25 119.8 104 62.5
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.9e-25 119.4 118 53.4
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.9e-25 119.4 118 54.2
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.9e-25 119.4 117 54.7
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.5e-25 119.0 113 57.5
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.5e-25 119.0 90 66.7
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 4.2e-25 118.2 116 54.3
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 5.5e-25 117.9 114 56.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 7.2e-25 117.5 118 52.5
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.2e-25 117.5 116 56.0
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 7.2e-25 117.5 118 53.4
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 9.3e-25 117.1 91 64.8
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.3e-25 117.1 116 52.6
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.2e-24 116.7 118 50.8
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.2e-24 116.7 89 65.2
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.6e-24 116.3 118 54.2
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.1e-24 115.9 116 52.6
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.7e-24 115.5 89 65.2
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.6e-24 114.8 116 50.9
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 6.1e-24 114.4 96 61.5
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 6.1e-24 114.4 118 51.7
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.9e-24 114.0 116 51.7
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.0e-23 113.6 115 52.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.0e-23 113.6 120 50.8
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.0e-23 113.6 103 60.2
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.3e-23 113.2 115 53.0
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-23 112.8 115 50.4
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.8e-23 112.8 115 50.4
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.8e-23 112.8 115 53.0
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.8e-23 112.8 82 67.1
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.8e-23 112.8 114 52.6
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-23 112.1 115 53.9
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.0e-23 112.1 115 50.4
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.0e-23 112.1 115 52.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.9e-23 111.7 91 60.4
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 5.1e-23 111.3 115 52.2
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 6.7e-23 110.9 115 52.2
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.5e-22 109.8 115 51.3
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.5e-22 109.8 115 51.3
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.9e-22 109.4 115 51.3
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 7.4e-22 107.5 79 65.8
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 7.4e-22 107.5 112 54.5
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.6e-21 106.3 78 66.7
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.2e-21 105.9 116 48.3
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.2e-21 105.9 81 63.0
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 2.8e-21 105.5 107 55.1
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 4.8e-21 104.8 88 60.2
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 4.8e-21 104.8 115 49.6
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 4.8e-21 104.8 108 54.6
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.3e-21 104.4 81 61.7
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 8.2e-21 104.0 115 48.7
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.4e-20 103.2 108 53.7
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.1e-20 102.1 139 43.9
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.3e-20 101.3 116 48.3
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 5.3e-20 101.3 115 50.4
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 5.3e-20 101.3 81 60.5
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 6.9e-20 100.9 108 52.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 3.4e-19 98.6 82 62.2
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 4.5e-19 98.2 154 39.0
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 4.5e-19 98.2 82 61.0
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.7e-18 96.3 88 58.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.7e-18 96.3 83 60.2
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 2.9e-18 95.5 91 58.2
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.8e-18 95.1 96 55.2
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 5.0e-18 94.7 75 62.7
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.9e-17 92.8 110 50.9
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.2e-16 90.1 92 55.4
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.0e-15 87.0 118 46.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.1e-15 84.7 94 52.1
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 7.4e-14 80.9 100 47.0
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 9.7e-14 80.5 82 50.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.8e-13 78.2 92 50.0
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 6.3e-13 77.8 77 55.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-12 77.0 75 56.0
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-12 77.0 75 56.0
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 3.1e-12 75.5 73 49.3
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.3e-12 74.7 60 63.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 6.9e-12 74.3 73 47.9
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 6.9e-12 74.3 83 49.4
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.4e-11 72.0 96 45.8
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.0e-10 70.5 85 45.9
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.9e-10 68.9 69 50.7
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.5e-09 65.9 55 61.8
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 9.4e-09 63.9 71 50.7
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.2e-08 63.5 60 55.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 2.1e-08 62.8 66 47.0
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 4.7e-08 61.6 61 49.2
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 6.1e-08 61.2 59 54.2
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.8e-07 59.7 74 39.2
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.1e-06 57.0 67 49.3


User provided reference genes

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