Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0445661 Helianthus annuus HOM05D003568 ORTHO05D004104 9.1e-101 370.5 231 100.0
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 8.6e-67 257.7 134 99.3
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 3.4e-55 219.2 133 84.2
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 2.7e-52 209.5 138 79.0
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 8.4e-46 188.0 140 67.9
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 4.2e-45 185.7 143 65.7
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 7.1e-45 184.9 143 64.3
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 7.1e-45 184.9 143 65.0
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 2.1e-44 183.3 139 68.3
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 2.1e-44 183.3 143 65.7
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 2.7e-44 183.0 143 65.0
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 2.7e-44 183.0 146 65.1
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 3.5e-44 182.6 143 65.7
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 1.0e-43 181.0 140 67.1
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 1.3e-43 180.6 142 69.0
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 1.3e-43 180.6 141 63.8
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 2.3e-43 179.9 143 64.3
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 2.3e-43 179.9 143 64.3
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 3.9e-43 179.1 145 62.8
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 3.9e-43 179.1 145 62.8
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 5.1e-43 178.7 145 62.8
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 6.6e-43 178.3 143 63.6
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 6.6e-43 178.3 143 62.9
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.1e-42 177.6 143 63.6
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 1.5e-42 177.2 143 65.0
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 1.5e-42 177.2 148 62.8
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 2.5e-42 176.4 143 62.2
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 3.3e-42 176.0 143 62.9
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 4.3e-42 175.6 138 65.9
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 4.3e-42 175.6 143 65.7
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 5.6e-42 175.3 143 63.6
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 7.3e-42 174.9 142 64.8
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 7.3e-42 174.9 143 61.5
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 9.6e-42 174.5 143 62.2
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 9.6e-42 174.5 141 63.8
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.2e-41 174.1 141 64.5
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 1.6e-41 173.7 131 67.2
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 2.8e-41 172.9 143 62.9
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 2.8e-41 172.9 141 64.5
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 2.8e-41 172.9 161 59.0
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 4.7e-41 172.2 141 63.1
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 4.7e-41 172.2 143 61.5
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 6.2e-41 171.8 140 65.7
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 6.2e-41 171.8 143 62.2
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 8.1e-41 171.4 141 63.1
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 8.1e-41 171.4 140 62.1
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 1.1e-40 171.0 143 60.1
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 1.1e-40 171.0 134 64.2
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 1.4e-40 170.6 143 62.9
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 3.1e-40 169.5 143 60.8
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 4.0e-40 169.1 143 62.9
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 4.0e-40 169.1 143 60.1
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 6.9e-40 168.3 143 63.6
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 1.2e-39 167.5 143 60.8
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 1.5e-39 167.2 143 62.9
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 2.0e-39 166.8 130 67.7
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 2.6e-39 166.4 143 62.2
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 4.4e-39 165.6 140 64.3
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 4.4e-39 165.6 143 61.5
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 9.9e-39 164.5 143 58.7
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 1.3e-38 164.1 147 61.2
Haze_19031 Corylus avellana HOM05D003568 ORTHO05D004104 2.2e-38 163.3 138 60.9
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 2.2e-38 163.3 130 64.6
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 2.9e-38 162.9 140 59.3
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 3.8e-38 162.5 133 63.2
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 4.9e-38 162.2 133 62.4
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 4.9e-38 162.2 133 62.4
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 4.9e-38 162.2 144 57.6
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 6.4e-38 161.8 147 61.2
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 6.4e-38 161.8 138 60.9
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 8.4e-38 161.4 130 64.6
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.1e-37 161.0 130 62.3
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 1.1e-37 161.0 130 62.3
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 1.4e-37 160.6 143 59.4
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 1.4e-37 160.6 143 59.4
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 1.4e-37 160.6 129 62.8
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 1.4e-37 160.6 143 59.4
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.9e-37 160.2 130 62.3
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 1.9e-37 160.2 130 63.8
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 5.4e-37 158.7 138 58.7
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 5.4e-37 158.7 140 59.3
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 7.1e-37 158.3 142 57.0
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 7.1e-37 158.3 142 57.0
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 7.1e-37 158.3 134 61.2
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 9.3e-37 157.9 129 62.0
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 9.3e-37 157.9 140 62.1
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.2e-36 157.5 130 63.1
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 1.2e-36 157.5 130 63.1
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 2.7e-36 156.4 127 63.0
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 4.6e-36 155.6 124 64.5
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 4.6e-36 155.6 124 64.5
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 4.6e-36 155.6 130 63.1
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 6.0e-36 155.2 125 60.8
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 7.8e-36 154.8 147 60.5
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 1.7e-35 153.7 130 64.6
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 1.7e-35 153.7 122 63.9
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 2.3e-35 153.3 124 63.7
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 3.0e-35 152.9 149 57.0
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 5.1e-35 152.1 140 57.1
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 5.1e-35 152.1 140 57.1
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 6.6e-35 151.8 136 58.1
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 1.1e-34 151.0 146 56.8
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 1.1e-34 151.0 137 59.9
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 1.5e-34 150.6 136 58.8
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 1.5e-34 150.6 146 56.8
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 1.9e-34 150.2 137 62.0
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 3.3e-34 149.4 128 58.6
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 9.6e-34 147.9 140 59.3
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 1.6e-33 147.1 150 56.7
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 2.1e-33 146.7 135 59.3
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 1.1e-32 144.4 121 64.5
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 1.1e-32 144.4 121 64.5
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 1.1e-32 144.4 142 56.3
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 1.8e-32 143.7 142 56.3
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 2.4e-32 143.3 140 52.9
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 4.0e-32 142.5 142 56.3
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 5.3e-32 142.1 128 58.6
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 9.0e-32 141.4 136 58.1
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 1.5e-31 140.6 134 56.0
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 2.0e-31 140.2 142 55.6
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 2.0e-31 140.2 142 54.9
Solyc10g019120.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 3.4e-31 139.4 142 54.9
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 5.8e-31 138.7 127 58.3
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 5.8e-31 138.7 142 54.9
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 1.3e-30 137.5 132 54.5
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 2.2e-30 136.7 117 58.1
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 2.9e-30 136.3 127 58.3
SEGI_20614 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 1.9e-29 133.7 158 50.0
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 3.2e-29 132.9 146 52.1
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 7.1e-29 131.7 116 57.8
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 4.6e-28 129.0 125 54.4
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 4.6e-28 129.0 116 61.2
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 1.8e-27 127.1 139 48.2
MBI03_g44580_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 2.8e-25 119.8 168 44.0
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 2.8e-25 119.8 121 52.1
MBI17_g30844_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 3.7e-25 119.4 164 45.1
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 8.1e-25 118.2 147 49.7
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 2.4e-24 116.7 147 49.0
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 4.5e-23 112.5 125 47.2
MBI19_g38425_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 6.4e-22 108.6 149 47.0
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 8.4e-22 108.2 95 61.1
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 1.3e-17 94.4 140 44.3
ClCG05G001230 Citrullus lanatus HOM05D003568 ORTHO05D004104 1.6e-17 94.0 135 41.5
MBI14_g09475_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D004104 1.1e-16 91.3 124 47.6
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.8e-16 90.5 104 51.0
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 4.5e-15 85.9 121 42.1
MBI08_g05068_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 5.8e-15 85.5 132 43.2
SEGI_24596 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 7.6e-15 85.1 123 44.7
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 4.2e-13 79.3 114 42.1
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 1.6e-12 77.4 117 41.0
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 2.1e-12 77.0 110 41.8
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 3.9e-11 72.8 51 64.7
TPR.G39543 Trifolium pratense HOM05D003568 ORTHO05D004104 3.9e-11 72.8 77 50.6
Pp3c7_5960 Physcomitrium patens HOM05D003568 ORTHO05D004104 1.1e-10 71.2 130 38.5
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 8.2e-09 65.1 113 34.5
HanXRQChr11g0327241 Helianthus annuus HOM05D000104 ORTHO05D006397 8.5e-06 55.1 31 100.0


User provided reference genes

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