Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 6.1e-92 341.3 237 100.0
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 3.5e-63 245.7 233 76.4
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 6.2e-28 128.6 236 40.3
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 3.3e-21 106.3 287 45.3
HanXRQChr17g0546381 Helianthus annuus HOM05D004950 ORTHO05D004838 4.0e-19 99.4 155 45.8
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 5.2e-19 99.0 241 35.3
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 4.4e-18 95.9 146 41.8
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 7.6e-18 95.1 250 32.0
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 9.9e-18 94.7 146 41.8
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 9.9e-18 94.7 156 41.7
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 1.3e-17 94.4 148 42.6
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 6.4e-17 92.0 175 37.1
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 3.2e-16 89.7 158 36.7
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 5.4e-16 89.0 179 36.9
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 1.2e-15 87.8 145 40.7
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 2.7e-15 86.7 152 40.1
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 2.7e-15 86.7 150 40.0
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 3.5e-15 86.3 175 36.0
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 6.0e-15 85.5 145 38.6
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 6.0e-15 85.5 152 36.8
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 7.8e-15 85.1 158 37.3
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 1.0e-14 84.7 152 35.5
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 1.3e-14 84.3 129 42.6
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 1.3e-14 84.3 151 37.7
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 1.3e-14 84.3 170 38.2
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 1.7e-14 84.0 180 32.2
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 2.3e-14 83.6 157 36.9
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 2.3e-14 83.6 177 37.9
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 2.3e-14 83.6 150 40.0
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 3.0e-14 83.2 141 43.3
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 5.1e-14 82.4 192 33.9
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 6.6e-14 82.0 132 42.4
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 1.1e-13 81.3 145 38.6
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 1.5e-13 80.9 173 35.3
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.9e-13 80.5 129 38.8
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 2.5e-13 80.1 129 38.8
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 2.5e-13 80.1 141 39.7
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 2.5e-13 80.1 137 40.1
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 3.3e-13 79.7 137 38.0
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 3.3e-13 79.7 181 35.9
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 3.3e-13 79.7 152 36.8
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 4.3e-13 79.3 162 36.4
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 4.3e-13 79.3 234 32.1
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 5.6e-13 79.0 154 35.7
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 5.6e-13 79.0 140 35.7
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 7.3e-13 78.6 125 40.0
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 9.6e-13 78.2 129 39.5
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 1.3e-12 77.8 137 40.1
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.3e-12 77.8 141 40.4
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 1.6e-12 77.4 141 40.4
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 2.1e-12 77.0 145 39.3
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 3.6e-12 76.3 164 34.1
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 3.6e-12 76.3 164 34.1
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 3.6e-12 76.3 164 34.1
Nitab4.5_0000241g0210 Nicotiana tabacum HOM05D000288 ORTHO05D004838 3.6e-12 76.3 141 39.7
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 3.6e-12 76.3 141 39.7
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 6.2e-12 75.5 158 36.7
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 4.0e-11 72.8 146 37.0
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 4.0e-11 72.8 130 41.5
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 6.9e-11 72.0 154 37.7
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 6.9e-11 72.0 173 37.6
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 1.2e-10 71.2 132 40.2
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.2e-10 71.2 176 35.2
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.2e-10 71.2 150 36.7
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 1.5e-10 70.9 148 35.1
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 2.0e-10 70.5 170 34.7
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 2.6e-10 70.1 140 35.7
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 7.6e-10 68.6 141 34.8
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 2.2e-09 67.0 137 38.0
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 2.9e-09 66.6 104 42.3
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 2.9e-09 66.6 151 39.7
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 4.9e-09 65.9 121 34.7
HPP92_002322 Vanilla planifolia HOM05D004950 ORTHO05D004838 1.1e-08 64.7 153 35.3
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 1.1e-08 64.7 124 41.1
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 2.4e-08 63.5 133 39.8
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 7.1e-08 62.0 48 60.4
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 7.1e-08 62.0 126 37.3
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 9.3e-08 61.6 150 33.3
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.2e-07 61.2 152 34.9
Rhsim10G0167200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.6e-07 60.8 151 35.1
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.6e-07 60.8 143 35.7
Gohir.D10G104000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.1e-07 60.5 148 31.8
COL.COLO4_15190 Corchorus olitorius HOM05D002657 ORTHO05D003059 3.5e-07 59.7 125 36.0
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 4.6e-07 59.3 58 58.6
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 4.6e-07 59.3 181 31.5
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 7.9e-07 58.5 140 32.1
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 1.0e-06 58.2 97 41.2
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 1.3e-06 57.8 96 38.5
Duzib177G1021 Durio zibethinus HOM05D002657 ORTHO05D003059 1.7e-06 57.4 135 34.1
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 2.3e-06 57.0 45 57.8
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 2.3e-06 57.0 66 42.4
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 2.3e-06 57.0 58 55.2
Gohir.D08G241100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 3.0e-06 56.6 135 33.3
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 3.0e-06 56.6 139 33.8
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 3.9e-06 56.2 95 41.1
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 3.9e-06 56.2 66 40.9
Gohir.A08G221658 Gossypium hirsutum HOM05D002657 ORTHO05D003059 3.9e-06 56.2 135 32.6
Gohir.A10G085000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.9e-06 56.2 148 30.4
Gorai.004G256500 Gossypium raimondii HOM05D002657 ORTHO05D003059 3.9e-06 56.2 135 33.3
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 5.1e-06 55.8 68 44.1
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 5.1e-06 55.8 68 44.1
Gorai.011G113500 Gossypium raimondii HOM05D004950 ORTHO05D004838 5.1e-06 55.8 148 30.4
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 5.1e-06 55.8 205 29.8
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 6.6e-06 55.5 93 38.7
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 6.6e-06 55.5 258 26.4
Duzib106G0276 Durio zibethinus HOM05D002657 ORTHO05D003059 6.6e-06 55.5 133 33.8
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 6.6e-06 55.5 114 35.1
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 6.6e-06 55.5 135 31.9
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 8.7e-06 55.1 92 38.0


User provided reference genes

Program Settings