Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1488.8 740 100.0
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1409.8 745 94.1
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1366.7 746 91.0
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1321.2 745 87.7
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1288.9 746 85.9
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1277.3 743 84.9
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1270.0 749 84.5
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1266.9 746 84.0
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1263.1 749 83.3
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1262.3 748 83.4
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 745 83.4
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 742 84.0
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 749 82.8
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 744 83.9
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 742 83.3
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 739 83.2
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 744 83.6
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1255.0 747 83.1
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 743 83.0
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 744 83.1
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 747 82.7
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 743 83.4
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1250.3 742 82.9
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 742 82.7
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 745 82.4
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1248.4 746 82.8
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 745 82.3
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 748 83.3
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 742 83.6
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 740 82.8
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 748 82.4
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 747 82.2
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 799 79.6
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 742 83.8
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 745 81.7
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 744 83.3
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 744 83.2
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 747 81.8
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 745 82.8
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1237.2 745 82.4
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1236.9 742 82.1
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1236.9 748 82.2
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 746 81.8
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 748 82.5
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 749 81.2
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 749 82.0
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 776 80.3
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1235.3 747 82.2
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 745 81.9
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 724 83.7
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1229.9 743 81.7
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 749 80.5
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 748 82.1
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1226.8 746 83.0
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1226.8 714 83.8
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 746 82.2
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 746 81.0
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 747 81.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 745 80.8
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 747 80.6
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 744 81.3
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 758 81.1
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 746 80.2
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 758 81.0
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 742 81.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 746 80.6
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 743 81.0
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 742 82.1
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1210.7 745 80.3
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 744 80.9
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 748 79.5
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 750 80.5
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 743 80.5
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 744 79.8
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 749 79.0
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1201.0 737 80.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 745 79.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 746 79.9
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 746 80.0
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 743 79.8
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 748 80.6
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 745 79.6
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 746 79.8
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 746 79.8
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1197.2 750 79.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 743 79.7
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 746 79.6
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 746 79.6
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 842 72.7
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 748 79.1
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 746 79.0
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1186.0 747 79.3
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 745 78.4
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 693 82.8
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1181.8 747 79.0
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 753 78.6
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1179.5 778 76.2
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1178.3 745 79.5
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1177.5 746 78.3
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1176.8 720 81.1
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 720 80.8
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1171.4 720 80.4
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1164.1 754 77.1
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1159.1 746 77.9
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1158.3 657 85.5
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1156.4 736 77.7
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1139.4 748 76.1
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1135.2 662 84.4
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1119.4 746 77.5
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1119.0 744 76.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1116.3 657 82.6
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1116.3 657 82.5
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1111.3 773 72.8
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1096.6 754 73.1
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1085.5 659 82.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1083.6 1056 57.1
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 3.4e-306 1054.7 748 73.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 3.1e-304 1048.1 623 83.8
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.5e-290 1002.7 679 69.5
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 4.7e-284 981.1 678 69.8
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.1e-280 969.9 677 69.9
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.9e-278 961.4 675 69.3
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.9e-278 961.4 675 69.3
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.9e-277 959.1 675 69.2
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.9e-275 950.3 688 67.9
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.7e-254 882.9 594 74.4
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 7.3e-253 877.5 679 62.6
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 6.9e-251 870.9 594 73.9
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 5.7e-229 798.1 680 57.2
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 1.2e-223 780.4 699 57.1
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 7.2e-216 754.6 679 57.4
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 9.1e-203 711.1 676 53.4
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 3.5e-202 709.1 674 59.8
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.0e-177 627.9 710 46.9
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 8.6e-161 571.6 319 88.4
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 4.4e-157 559.3 362 74.6
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 2.2e-156 557.0 305 86.9
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 7.6e-141 505.4 298 84.9
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 2.9e-132 476.9 301 78.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.0e-121 441.8 306 71.6
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.3e-116 424.9 293 72.0
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 2.5e-107 394.0 237 80.6
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.3e-95 355.1 242 73.6
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.4e-91 341.7 220 77.7
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 9.4e-91 339.0 297 61.6
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.3e-87 328.6 296 60.1
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.7e-87 328.2 222 77.0
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 3.1e-70 270.8 134 98.5
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 2.0e-69 268.1 173 74.0
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.3e-68 265.4 392 46.4
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.5e-64 251.9 126 94.4
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 3.4e-64 250.8 260 55.4
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 7.5e-64 249.6 369 39.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.7e-63 248.4 164 75.6
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-57 228.4 114 93.9
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 5.1e-44 183.7 117 76.1
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.0e-41 174.1 182 56.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 7.5e-40 169.9 122 70.5
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 7.8e-37 159.8 102 73.5
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 3.9e-36 157.5 113 72.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 8.6e-36 156.4 141 56.0
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.1e-34 151.8 90 78.9
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 3.5e-29 134.4 83 78.3
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 8.7e-28 129.8 105 60.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.5e-27 129.0 139 56.8
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 9.0e-25 119.8 61 88.5
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.0e-24 118.6 136 55.1
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.4e-24 117.9 220 31.4
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 9.9e-24 116.3 99 62.6
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.6e-16 90.1 56 78.6
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.1e-14 86.3 50 76.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 2.3e-12 78.6 42 88.1
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 8.7e-12 76.6 42 90.5
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.1e-10 72.0 38 89.5
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 3.2e-06 58.2 136 36.0


User provided reference genes

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