Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 5.1e-98 360.9 165 100.0
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 3.0e-66 255.4 136 83.1
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.3e-64 250.0 130 81.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 2.9e-64 248.8 134 80.6
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.1e-63 245.0 134 76.1
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.2e-62 243.4 134 76.9
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.6e-62 243.0 134 79.1
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.5e-62 241.9 135 77.0
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 3.5e-62 241.9 133 77.4
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 4.6e-62 241.5 134 78.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 4.6e-62 241.5 134 78.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 4.6e-62 241.5 134 75.4
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 5.9e-62 241.1 134 75.4
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 7.8e-62 240.7 135 77.8
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.3e-61 240.0 134 75.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.3e-61 240.0 134 76.1
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 3.0e-61 238.8 135 71.9
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 3.9e-61 238.4 134 74.6
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 3.9e-61 238.4 135 73.3
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.1e-60 236.9 134 77.6
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.5e-60 236.5 128 78.9
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.3e-60 235.3 133 75.2
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 4.3e-60 235.0 135 74.1
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 4.3e-60 235.0 135 74.1
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 4.3e-60 235.0 134 75.4
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.3e-60 235.0 134 74.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 5.6e-60 234.6 133 74.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 5.6e-60 234.6 135 73.3
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 5.6e-60 234.6 134 73.9
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 5.6e-60 234.6 136 72.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 7.3e-60 234.2 136 72.8
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 9.5e-60 233.8 134 73.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 9.5e-60 233.8 131 74.8
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.2e-59 233.4 134 74.6
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.2e-59 233.4 135 72.6
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.2e-59 233.4 136 71.3
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.2e-59 233.4 134 71.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.6e-59 233.0 134 74.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.6e-59 233.0 136 72.8
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.6e-59 233.0 134 73.1
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.1e-59 232.6 134 72.4
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.8e-59 232.3 134 71.6
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 3.6e-59 231.9 136 72.8
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 3.6e-59 231.9 136 71.3
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 3.6e-59 231.9 134 71.6
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.6e-59 231.9 132 72.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 4.7e-59 231.5 135 71.9
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 6.2e-59 231.1 133 73.7
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 6.2e-59 231.1 134 72.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 6.2e-59 231.1 134 72.4
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 8.0e-59 230.7 134 71.6
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.0e-58 230.3 134 74.6
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.4e-58 229.9 134 70.9
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.8e-58 229.6 134 71.6
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.8e-58 229.6 134 73.9
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.3e-58 229.2 134 70.9
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 2.3e-58 229.2 139 69.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.1e-58 228.8 134 73.1
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 3.1e-58 228.8 134 73.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.0e-58 228.4 134 71.6
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.0e-58 228.4 134 73.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 5.2e-58 228.0 135 71.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 6.8e-58 227.6 134 71.6
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 6.8e-58 227.6 134 70.9
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 8.9e-58 227.3 136 69.9
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 8.9e-58 227.3 134 71.6
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.2e-57 226.9 135 72.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-57 226.5 134 70.9
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.5e-57 226.5 132 70.5
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.0e-57 226.1 134 70.1
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-57 226.1 134 70.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 2.0e-57 226.1 129 72.9
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 4.4e-57 224.9 134 72.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 4.4e-57 224.9 135 68.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.5e-57 224.2 134 70.9
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 9.8e-57 223.8 145 64.8
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.3e-56 223.4 134 70.1
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.3e-56 223.4 134 70.9
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.3e-56 223.4 134 71.6
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.3e-56 223.4 133 70.7
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.9e-56 222.2 134 71.6
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 2.9e-56 222.2 135 71.1
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 6.4e-56 221.1 134 69.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.4e-55 219.9 135 69.6
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.9e-55 219.5 134 70.1
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.9e-55 219.5 133 66.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 2.4e-55 219.2 129 72.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.4e-55 219.2 134 69.4
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.4e-55 219.2 134 69.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.2e-55 218.8 134 69.4
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 4.1e-55 218.4 134 67.2
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.4e-55 218.0 134 68.7
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 5.4e-55 218.0 128 73.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 5.4e-55 218.0 134 69.4
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 9.2e-55 217.2 133 69.9
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 9.2e-55 217.2 134 68.7
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.2e-54 216.9 134 70.1
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-54 216.9 134 68.7
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.2e-54 216.9 123 74.8
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.5e-54 215.3 132 69.7
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.8e-54 214.2 130 68.5
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.8e-54 214.2 121 73.6
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.3e-53 213.4 133 67.7
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.3e-53 213.4 134 65.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.3e-53 213.4 130 67.7
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.7e-53 213.0 131 67.9
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.7e-53 213.0 125 71.2
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 3.0e-53 212.2 131 67.2
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 3.9e-53 211.8 129 69.8
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 6.6e-53 211.1 126 71.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 6.6e-53 211.1 134 66.4
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.9e-52 209.5 119 74.8
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.5e-52 209.1 131 69.5
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 5.6e-52 208.0 173 57.8
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.6e-51 206.5 121 71.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.8e-51 205.7 121 71.9
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 2.8e-51 205.7 129 66.7
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 4.0e-50 201.8 134 65.7
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.5e-49 199.9 120 67.5
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.6e-49 199.1 134 64.2
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 7.5e-49 197.6 131 64.9
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.7e-48 196.4 123 66.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.2e-48 196.1 124 63.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 3.5e-46 188.7 133 61.7
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 4.6e-46 188.3 122 64.8
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 4.6e-46 188.3 129 62.0
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.0e-46 188.0 131 63.4
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.3e-45 186.8 133 60.2
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 5.6e-44 181.4 131 58.8
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 7.3e-44 181.0 130 61.5
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-43 180.3 134 56.7
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.2e-43 180.3 107 69.2
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 3.6e-43 178.7 101 71.3
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-42 177.2 132 61.4
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.4e-42 176.8 129 57.4
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.1e-42 175.6 97 77.3
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.9e-42 174.1 131 60.3
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-41 172.9 134 59.7
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 9.2e-39 164.1 135 59.3
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 3.3e-36 155.6 96 74.0
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 3.1e-34 149.1 97 64.9
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 5.8e-33 144.8 75 84.0
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 4.9e-32 141.7 141 46.1
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.4e-32 141.0 85 70.6
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.1e-26 122.5 69 75.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 3.1e-26 122.5 72 79.2
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.2e-23 112.1 112 49.1
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-21 106.3 63 74.6
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-20 103.6 78 57.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.6e-19 100.1 79 57.0


User provided reference genes

Program Settings