Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 1.5e-29 132.1 64 100.0
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 1.9e-24 115.2 63 88.9
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 1.2e-23 112.5 63 87.3
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 2.8e-23 111.3 63 85.7
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 1.4e-22 109.0 63 84.1
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 5.2e-22 107.1 63 79.4
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 4.9e-20 100.5 62 75.8
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 8.3e-20 99.8 62 75.8
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 1.4e-19 99.0 62 72.6
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.8e-19 98.6 62 74.2
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 2.4e-19 98.2 62 72.6
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 2.4e-19 98.2 62 72.6
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.4e-19 98.2 63 73.0
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 2.4e-19 98.2 60 76.7
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 3.2e-19 97.8 62 72.6
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 3.2e-19 97.8 62 72.6
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 4.1e-19 97.4 62 72.6
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 9.2e-19 96.3 62 72.6
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 9.2e-19 96.3 62 72.6
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 9.2e-19 96.3 56 80.4
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 9.2e-19 96.3 62 71.0
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 1.2e-18 95.9 62 69.4
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.6e-18 95.5 62 69.4
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 1.6e-18 95.5 62 69.4
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 2.0e-18 95.1 62 71.0
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 2.0e-18 95.1 63 69.8
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 2.0e-18 95.1 62 69.4
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 2.0e-18 95.1 62 72.6
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 3.5e-18 94.4 62 69.4
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 3.5e-18 94.4 62 71.0
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 4.6e-18 94.0 57 75.4
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 4.6e-18 94.0 63 68.3
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 5.9e-18 93.6 62 71.0
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 7.8e-18 93.2 62 69.4
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 1.0e-17 92.8 62 67.7
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 1.0e-17 92.8 62 69.4
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 1.0e-17 92.8 62 64.5
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 1.3e-17 92.4 62 67.7
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 1.3e-17 92.4 62 67.7
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.7e-17 92.0 62 69.4
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 1.7e-17 92.0 62 64.5
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 1.7e-17 92.0 62 66.1
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 1.7e-17 92.0 62 71.0
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.7e-17 92.0 62 71.0
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.7e-17 92.0 62 69.4
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 2.3e-17 91.7 62 67.7
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 2.3e-17 91.7 57 71.9
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 3.0e-17 91.3 63 68.3
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 3.0e-17 91.3 62 69.4
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 3.0e-17 91.3 61 67.2
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 3.9e-17 90.9 62 67.7
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 3.9e-17 90.9 61 62.3
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 3.9e-17 90.9 61 65.6
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 3.9e-17 90.9 62 67.7
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 5.0e-17 90.5 62 66.1
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 5.0e-17 90.5 55 74.5
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 5.0e-17 90.5 57 75.4
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 5.0e-17 90.5 62 67.7
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 6.6e-17 90.1 62 66.1
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 6.6e-17 90.1 62 67.7
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 6.6e-17 90.1 62 67.7
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 6.6e-17 90.1 62 66.1
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 6.6e-17 90.1 62 66.1
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 8.6e-17 89.7 62 64.5
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 1.1e-16 89.4 57 71.9
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 1.1e-16 89.4 62 67.7
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 1.1e-16 89.4 57 70.2
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 1.1e-16 89.4 62 66.1
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.5e-16 89.0 62 66.1
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 1.5e-16 89.0 62 66.1
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 1.5e-16 89.0 62 66.1
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.5e-16 89.0 62 67.7
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.5e-16 89.0 62 67.7
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 1.9e-16 88.6 62 66.1
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 2.5e-16 88.2 62 66.1
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 2.5e-16 88.2 54 77.8
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 2.5e-16 88.2 62 67.7
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 4.3e-16 87.4 55 70.9
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 4.3e-16 87.4 58 70.7
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 5.6e-16 87.0 62 66.1
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 9.5e-16 86.3 62 64.5
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 1.2e-15 85.9 62 62.9
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.8e-15 84.7 70 61.4
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.8e-15 84.7 70 61.4
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 2.8e-15 84.7 63 61.9
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 3.6e-15 84.3 62 62.9
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 8.0e-15 83.2 57 64.9
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 1.0e-14 82.8 61 65.6
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 1.0e-14 82.8 61 62.3
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 1.4e-14 82.4 66 62.1
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 1.8e-14 82.0 63 58.7
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.3e-14 81.6 70 60.0
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 2.3e-14 81.6 66 60.6
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 8.9e-14 79.7 66 59.1
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 2.6e-13 78.2 62 66.1
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 4.4e-13 77.4 65 58.5
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 4.4e-13 77.4 55 63.6
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 9.8e-13 76.3 55 63.6
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 2.9e-12 74.7 102 44.1
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 3.7e-12 74.3 59 59.3
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 3.7e-12 74.3 115 40.0
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 8.3e-12 73.2 64 56.2
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.1e-11 72.8 49 67.3
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 1.4e-11 72.4 63 58.7
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.9e-11 72.0 63 60.3
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 3.2e-11 71.2 96 40.6
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 4.1e-11 70.9 62 59.7
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 5.4e-11 70.5 61 50.8
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.2e-10 69.3 61 50.8
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.6e-10 68.9 61 50.8
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 1.0e-09 66.2 51 54.9
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 3.3e-08 61.2 44 65.9
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 7.3e-08 60.1 53 47.2
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 1.4e-06 55.8 55 45.5
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 6.8e-06 53.5 80 41.2


User provided reference genes

Program Settings