Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 6.6e-308 1060.1 614 100.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.2e-155 554.3 639 60.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.6e-144 516.2 629 59.5
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 5.0e-138 495.7 626 55.1
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.4e-100 370.5 743 44.3
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.1e-92 345.1 712 44.8
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.1e-92 345.1 652 43.6
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.2e-92 343.6 785 40.6
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.7e-91 340.5 702 44.0
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 7.3e-89 332.4 671 43.4
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.6e-88 331.3 698 40.8
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.6e-88 331.3 659 43.1
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 3.6e-88 330.1 651 43.9
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.5e-86 324.7 634 42.7
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.6e-86 323.9 696 41.4
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 6.4e-85 319.3 660 42.6
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.4e-84 318.2 605 46.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 3.2e-84 317.0 663 41.8
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 3.5e-83 313.5 749 43.3
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 3.9e-82 310.1 736 39.4
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 5.1e-82 309.7 668 41.5
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 6.6e-82 309.3 663 42.5
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.5e-81 307.4 608 44.4
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-79 301.2 605 43.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 6.8e-79 299.3 605 45.1
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 2.6e-78 297.4 648 43.2
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 4.4e-78 296.6 754 38.9
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 3.8e-77 293.5 708 40.0
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.9e-76 291.2 705 42.1
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 3.2e-76 290.4 696 42.8
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 5.4e-76 289.7 588 45.1
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.6e-75 288.1 711 41.9
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.6e-75 288.1 692 38.6
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.7e-75 287.3 691 41.0
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 7.8e-75 285.8 715 40.6
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.7e-74 284.6 676 39.3
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 6.6e-74 282.7 710 40.6
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 6.6e-74 282.7 708 39.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 8.7e-74 282.3 752 37.0
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.9e-73 281.2 701 39.8
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 3.3e-73 280.4 643 40.9
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 4.3e-73 280.0 646 41.8
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 3.6e-72 276.9 681 38.3
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.1e-72 275.8 665 41.7
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-71 275.4 703 40.5
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-71 275.4 703 40.5
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 5.3e-71 273.1 700 38.9
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 6.9e-71 272.7 629 39.4
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 4.4e-70 270.0 623 42.9
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 9.9e-70 268.9 676 37.7
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.2e-69 267.7 711 37.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 4.9e-69 266.5 772 38.9
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 6.4e-69 266.2 770 36.2
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 8.4e-69 265.8 754 36.5
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.9e-68 264.6 730 38.4
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.2e-67 261.9 513 46.6
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-67 261.9 640 42.5
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.0e-66 258.8 764 35.6
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 1.7e-66 258.1 614 38.8
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 3.9e-66 256.9 620 39.7
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 3.3e-65 253.8 611 43.4
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-63 248.1 765 36.5
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.1e-63 247.3 765 37.6
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.9e-63 246.1 508 40.6
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.2e-62 245.4 637 41.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.0e-62 244.6 773 36.5
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.7e-61 241.5 719 36.4
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.7e-61 241.5 660 39.5
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.9e-61 240.7 706 37.0
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.8e-61 240.4 700 38.1
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 4.9e-61 240.0 758 35.0
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 6.4e-61 239.6 716 37.8
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 8.4e-61 239.2 727 37.7
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 2.4e-60 237.7 633 38.7
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 9.3e-60 235.7 671 35.5
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 7.9e-59 232.6 720 39.0
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.8e-58 231.5 594 38.2
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 5.1e-58 229.9 638 37.0
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.1e-57 228.8 568 39.1
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.3e-57 227.3 606 40.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 5.6e-57 226.5 676 35.8
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 9.6e-57 225.7 574 38.2
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.3e-56 225.3 631 40.9
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.1e-56 224.6 639 39.6
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.8e-56 224.2 594 39.2
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.4e-55 221.9 651 40.1
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.8e-55 221.5 692 38.4
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.1e-55 220.7 541 38.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.6e-54 217.6 558 39.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 4.5e-54 216.9 712 35.8
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.5e-54 216.9 767 35.1
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.0e-53 215.7 674 36.6
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.3e-53 215.3 649 35.4
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.7e-53 214.9 566 38.0
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.7e-53 214.9 695 36.8
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.2e-52 210.7 738 35.8
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.6e-51 208.4 607 36.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 5.1e-50 203.4 707 36.8
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 5.1e-50 203.4 761 34.6
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 6.7e-50 203.0 687 35.5
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.7e-50 203.0 692 35.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.5e-49 201.8 566 38.0
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 7.4e-49 199.5 629 36.1
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 7.4e-49 199.5 509 36.3
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.8e-48 197.6 694 34.9
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.8e-47 194.9 396 43.4
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.8e-47 194.9 587 34.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.8e-47 194.9 605 35.2
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 4.1e-47 193.7 633 35.2
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.3e-47 193.4 664 35.8
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 6.9e-47 193.0 611 34.7
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.2e-46 192.2 621 35.1
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.2e-46 192.2 526 37.1
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 2.0e-46 191.4 756 32.4
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.7e-45 188.3 666 34.5
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.7e-45 188.3 659 34.1
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.9e-45 187.6 719 34.9
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.9e-45 187.6 452 39.2
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.4e-44 185.3 652 36.0
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-44 185.3 595 37.0
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 2.5e-44 184.5 352 43.8
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.7e-43 181.0 659 35.5
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.5e-41 175.3 629 34.7
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.3e-40 172.2 714 34.9
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.6e-40 171.8 299 54.2
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.8e-40 171.0 659 34.9
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 4.1e-39 167.2 670 33.6
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 5.3e-39 166.8 630 34.6
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 2.6e-38 164.5 443 37.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.6e-38 164.5 658 30.1
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 7.7e-38 162.9 645 36.0
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.3e-37 162.2 641 32.1
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.3e-37 162.2 477 36.1
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.3e-37 162.2 477 36.1
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.8e-37 160.6 420 39.5
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.5e-37 159.8 246 46.7
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 8.5e-37 159.5 607 32.5
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.1e-36 159.1 620 33.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.5e-36 157.9 388 38.7
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 1.4e-34 152.1 617 35.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 8.8e-34 149.4 778 28.5
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 3.3e-33 147.5 626 32.3
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.2e-32 144.8 475 35.4
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 6.9e-31 139.8 447 34.0
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.2e-30 139.0 622 32.6
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.9e-28 131.7 465 33.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 7.2e-28 129.8 252 41.3
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.2e-22 112.5 278 41.0
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 4.5e-22 110.5 452 34.7
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.0e-21 109.4 285 38.2
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.2e-20 104.0 565 29.2
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.2e-19 102.4 534 28.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.1e-19 100.1 588 27.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.1e-19 100.1 182 43.4
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 5.7e-17 93.6 154 45.5
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 9.7e-17 92.8 391 35.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 6.3e-16 90.1 156 43.6
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.4e-15 89.0 126 47.6
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 5.3e-15 87.0 360 33.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.5e-14 84.0 215 36.3
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 2.7e-11 74.7 515 28.3
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.0e-10 72.8 184 38.0
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 3.4e-09 67.8 346 28.9
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.3e-08 65.9 105 46.7
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 1.7e-08 65.5 169 39.6
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 2.8e-08 64.7 166 38.0
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.7e-08 64.3 114 43.9
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.8e-07 62.0 138 37.7
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 5.4e-07 60.5 84 52.4
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 7.0e-07 60.1 597 30.5
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.6e-06 58.9 102 45.1


User provided reference genes

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