Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 2.5e-206 721.8 352 100.0
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.1e-141 506.1 342 73.7
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 8.4e-122 441.0 297 74.1
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 8.4e-122 441.0 367 61.9
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 2.1e-120 436.4 360 60.8
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 9.6e-118 427.6 365 60.0
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.6e-117 425.6 364 61.3
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 4.7e-117 425.2 365 59.2
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 3.1e-116 422.5 365 59.7
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.1e-116 422.5 371 58.8
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 4.0e-116 422.2 371 58.8
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 5.2e-116 421.8 363 59.2
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.5e-115 420.2 363 59.2
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 5.8e-115 418.3 352 60.2
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 7.6e-115 417.9 373 56.8
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.7e-114 416.8 366 58.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.2e-114 416.4 350 61.4
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 4.9e-114 415.2 375 60.3
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 6.4e-114 414.8 367 57.2
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 8.4e-114 414.5 363 58.7
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.1e-113 414.1 353 60.6
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.1e-113 414.1 372 59.1
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 2.4e-113 412.9 369 58.8
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 5.4e-113 411.8 377 58.9
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 9.3e-113 411.0 358 58.9
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 9.3e-113 411.0 371 59.0
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.6e-112 410.2 359 59.1
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 3.5e-112 409.1 372 57.8
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 4.6e-112 408.7 368 57.6
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 6.0e-112 408.3 350 61.4
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 7.8e-112 407.9 369 57.5
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.3e-111 407.1 368 58.7
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.7e-111 406.8 379 57.5
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 3.9e-111 405.6 370 57.0
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 3.9e-111 405.6 365 59.2
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 8.7e-111 404.4 350 59.4
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.5e-110 403.7 365 58.1
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.5e-110 403.7 363 59.5
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 2.5e-110 402.9 375 58.1
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.3e-110 402.5 357 58.8
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 3.3e-110 402.5 386 57.0
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 4.3e-110 402.1 371 56.6
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 7.3e-110 401.4 369 55.0
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 7.3e-110 401.4 369 55.3
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 9.6e-110 401.0 369 56.1
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 9.6e-110 401.0 365 56.2
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.3e-109 400.6 361 59.3
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 2.1e-109 399.8 368 57.6
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.8e-109 399.4 361 59.3
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 3.6e-109 399.1 361 56.0
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 3.6e-109 399.1 374 55.9
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.6e-109 399.1 364 56.9
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.1e-108 397.5 371 57.1
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.8e-108 396.7 373 55.8
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.4e-108 396.4 375 56.3
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.4e-108 396.4 372 56.7
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.4e-108 396.4 365 58.4
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.4e-108 396.4 367 56.4
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 5.3e-108 395.2 360 57.8
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.3e-108 395.2 360 58.6
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 5.3e-108 395.2 367 55.9
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.0e-108 394.4 357 58.0
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.2e-107 394.0 360 57.5
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.5e-107 393.7 366 56.6
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-107 393.7 360 57.8
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-107 393.7 360 57.8
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 2.6e-107 392.9 372 55.6
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 3.8e-106 389.0 379 55.7
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 6.4e-106 388.3 363 55.9
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 6.4e-106 388.3 370 54.6
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 6.4e-106 388.3 379 55.9
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 8.4e-106 387.9 370 54.9
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 1.1e-105 387.5 351 58.4
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.4e-105 387.1 369 54.5
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.4e-105 386.3 369 56.6
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 5.4e-105 385.2 358 54.7
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 5.4e-105 385.2 365 54.2
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 7.1e-105 384.8 365 54.2
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 7.1e-105 384.8 369 54.5
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 2.1e-104 383.3 365 54.2
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 2.1e-104 383.3 366 54.1
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.7e-104 382.9 375 53.3
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.6e-104 382.1 375 53.1
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.9e-104 381.3 375 52.8
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.3e-103 380.6 370 54.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.7e-103 380.2 369 52.6
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 3.0e-103 379.4 372 54.0
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 5.1e-103 378.6 369 53.1
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 5.1e-103 378.6 372 54.0
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 6.6e-103 378.3 359 57.4
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.5e-102 377.1 357 55.7
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.9e-102 376.7 351 56.4
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.1e-101 373.2 361 56.2
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.8e-100 370.2 379 52.2
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.3e-98 364.0 366 53.6
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.2e-98 363.2 372 52.4
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.4e-98 361.7 372 52.2
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 1.1e-97 360.9 355 53.8
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.5e-97 358.6 372 52.2
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.0e-95 354.4 370 51.9
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.2e-91 340.9 335 52.5
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.2e-91 340.9 335 52.5
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.5e-89 332.0 373 46.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.1e-87 325.5 356 47.5
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.4e-86 321.6 359 46.2
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.4e-84 317.4 456 40.1
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 3.1e-84 316.2 368 47.3
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 6.5e-82 308.5 269 55.4
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 6.5e-82 308.5 373 47.2
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 3.5e-80 302.8 367 46.9
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.0e-75 287.0 376 42.8
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.7e-74 283.9 361 44.3
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 4.6e-72 275.8 351 45.9
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 2.4e-68 263.5 360 40.6
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 6.9e-68 261.9 339 43.7
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.6e-64 250.8 329 42.9
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 2.1e-64 250.4 373 38.6
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 4.5e-59 232.6 228 56.6
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 2.7e-56 223.4 162 67.3
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 2.6e-54 216.9 198 56.6
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 4.8e-53 212.6 201 47.3
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.8e-52 210.7 182 57.7
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 8.0e-48 195.3 241 43.6
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.4e-47 194.5 145 64.8
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 3.1e-44 183.3 241 41.9
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.2e-37 160.6 295 31.9
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 7.0e-36 155.6 171 51.5
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.6e-34 149.1 125 55.2
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 6.6e-34 149.1 125 55.2
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.0e-30 137.5 125 53.6
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 4.3e-25 119.8 283 28.6
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.8e-23 114.4 104 55.8
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.1e-23 113.6 88 56.8
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 4.0e-23 113.2 88 56.8
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.8e-23 112.5 88 55.7
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 8.9e-23 112.1 109 49.5
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.1e-20 105.1 88 54.5
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.0e-20 102.4 93 52.7
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 7.8e-19 99.0 227 36.1
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 9.8e-14 82.0 65 55.4
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 5.4e-12 76.3 44 81.8
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 7.8e-11 72.4 92 52.2
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.9e-10 70.1 79 49.4
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.1e-09 68.6 58 56.9
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.3e-09 66.6 65 50.8
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.7e-08 63.2 61 55.7
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.7e-08 63.2 61 55.7
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.4e-07 61.6 59 50.8


User provided reference genes

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