Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 3881.6 2111 100.0
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 3511.9 2148 91.0
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 2334.3 2358 63.2
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 2165.6 2287 63.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1474.5 2491 46.4
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1439.1 2478 46.0
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1358.6 2525 43.5
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1332.8 2489 43.3
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1332.4 2516 44.4
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1328.5 2470 44.2
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1324.3 2494 43.1
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1322.8 2504 42.6
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1314.7 2493 43.0
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1310.8 2539 43.1
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1309.7 2529 42.7
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1307.0 2496 42.2
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1303.1 2522 42.9
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1300.8 2505 42.7
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1300.0 2488 42.6
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1297.0 2499 42.6
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1295.0 2489 42.7
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1293.9 2448 43.6
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1292.3 2411 43.9
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1278.5 2140 46.2
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1273.1 2488 42.0
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1262.3 2469 42.5
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1256.9 2279 44.8
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1254.2 2493 41.6
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1253.0 2424 42.2
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1252.7 2470 42.6
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1252.7 2377 43.4
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1252.3 2492 41.7
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1243.4 2497 42.0
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1238.8 2477 41.7
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1235.3 2462 42.1
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1233.4 2614 41.0
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1232.6 2496 40.9
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1226.8 2007 46.8
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1226.8 2487 41.6
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1225.3 2487 41.8
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1220.3 2463 41.1
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1220.3 2467 41.3
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1219.5 2479 41.7
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1219.1 2482 41.7
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1219.1 2478 42.0
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1213.4 2549 41.1
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1209.9 2542 40.6
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1209.5 2530 41.7
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1194.9 2459 41.4
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1193.7 2461 41.4
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1192.9 2510 41.6
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1188.7 2550 40.7
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1186.4 2554 40.6
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1180.6 2355 41.3
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1171.4 2483 40.9
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1164.8 2459 40.9
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1159.8 2448 41.7
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1148.7 2499 40.0
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1145.6 2492 40.1
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1145.6 2466 40.2
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1138.6 2433 39.8
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1134.4 2447 40.7
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1121.3 2465 40.0
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1119.8 2465 41.1
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1116.7 2472 38.7
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1104.4 2475 39.8
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1102.0 2345 39.8
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1100.5 2295 41.9
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1099.3 2413 41.4
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1094.0 2461 40.2
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1090.5 2415 40.0
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1090.1 2462 39.5
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1089.3 2488 40.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1088.6 2420 41.1
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1077.0 2525 38.1
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 2.2e-310 1070.1 2485 38.8
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 3.5e-308 1062.8 2419 39.1
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 7.8e-308 1061.6 2436 39.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 4.3e-306 1055.8 2317 39.4
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 1.6e-305 1053.9 2460 39.8
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 2.4e-304 1050.0 2261 40.7
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 4.4e-303 1045.8 2465 39.5
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 1.0e-299 1034.6 2426 38.7
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 1.1e-298 1031.2 2305 39.7
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 2.8e-297 1026.5 2273 39.3
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 1.0e-291 1008.1 2340 39.2
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 1.3e-289 1001.1 2402 38.6
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 1.0e-283 981.5 2427 38.0
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 1.4e-280 971.1 2535 37.0
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 4.2e-269 932.9 2324 39.4
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 3.9e-267 926.4 2473 38.6
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 2.2e-265 920.6 2343 37.3
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 9.4e-253 878.6 2329 37.7
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 1.0e-243 848.6 2259 37.7
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 3.2e-237 827.0 2535 35.1
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 7.2e-237 825.9 2119 37.8
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 9.1e-232 808.9 2236 36.1
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 1.3e-225 788.5 1870 38.3
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 5.2e-219 766.5 1727 40.5
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 7.5e-218 762.7 2180 35.9
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 7.0e-216 756.1 2336 35.2
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.3e-203 714.5 1240 44.9
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 8.9e-195 686.0 2045 35.5
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.5e-181 642.1 2122 35.2
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.5e-181 642.1 2122 35.2
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 2.2e-177 628.2 2160 34.8
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.4e-176 625.5 1621 38.7
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 3.2e-176 624.4 2130 35.4
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 4.2e-176 624.0 2123 35.6
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 3.5e-175 620.9 958 46.0
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 5.1e-174 617.1 2236 33.4
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.3e-163 580.5 713 53.4
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.0e-153 549.7 1067 43.6
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.8e-150 538.9 1659 34.2
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 3.7e-148 531.2 2533 30.6
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.8e-147 528.9 1809 34.3
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.8e-134 485.7 926 44.2
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.7e-132 478.0 2329 30.3
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 3.0e-126 458.4 1030 41.1
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 9.4e-120 436.8 954 42.1
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.7e-116 426.0 574 53.0
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 4.9e-100 371.3 451 51.0
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 5.4e-91 341.3 653 38.9
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.5e-88 332.4 664 40.2
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 7.3e-88 330.9 903 35.7
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 8.6e-81 307.4 1667 30.1
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 4.0e-78 298.5 478 45.4
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 4.2e-75 288.5 1289 31.7
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.5e-72 279.3 1078 30.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.1e-56 227.3 275 47.6
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 6.9e-54 218.0 934 30.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.0e-49 204.1 2592 25.5
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 3.0e-49 202.6 2074 26.3
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.9e-49 202.2 961 32.9
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 6.7e-49 201.4 2117 25.6
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 4.1e-46 192.2 236 54.7
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 5.3e-46 191.8 242 54.5
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.6e-45 189.5 1240 28.3
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 2.5e-43 183.0 271 45.4
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.6e-42 180.3 1203 27.7
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 8.5e-36 157.9 521 32.8
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 2.5e-27 129.8 706 28.8
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.6e-26 127.1 283 34.3
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 1.7e-23 117.1 747 28.0
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 9.1e-22 111.3 308 34.1
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 6.5e-20 105.1 220 40.5
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 9.4e-19 101.3 226 38.1
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.4e-17 97.4 187 38.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.5e-16 94.0 213 35.2
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.3e-16 92.8 75 65.3
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 2.8e-15 89.7 113 51.3
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 6.3e-15 88.6 321 31.5
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 2.0e-13 83.6 61 63.9
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.0e-13 83.6 61 63.9
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 3.8e-12 79.3 70 65.7
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 7.2e-11 75.1 142 40.1
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 4.8e-07 62.4 80 45.0
unitig_736.g22378 Utricularia gibba HOM05D004560 ORTHO05D037471 4.8e-07 62.4 75 56.0
unitig_899.g14934 Utricularia gibba HOM05D004560 ORTHO05D037471 1.4e-06 60.8 75 52.0
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.1e-06 59.7 237 30.8


User provided reference genes

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