Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.8e-177 625.2 315 100.0
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 3.2e-125 452.2 314 75.8
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.5e-117 426.0 282 75.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 3.3e-109 399.1 304 69.1
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 5.7e-106 388.3 319 64.3
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.2e-105 386.3 270 71.5
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 2.9e-105 386.0 294 67.7
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 7.0e-104 381.3 291 68.4
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 9.2e-104 380.9 316 64.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.6e-103 380.2 294 67.7
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.6e-103 380.2 294 67.7
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 5.9e-103 378.3 291 68.0
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 5.0e-102 375.2 297 66.3
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 6.6e-102 374.8 273 67.4
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 2.9e-97 359.4 267 67.8
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.7e-97 359.0 295 64.4
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 6.4e-97 358.2 271 67.2
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.4e-96 357.1 273 66.3
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.4e-96 357.1 266 68.4
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.4e-96 356.3 308 60.4
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.1e-96 355.5 306 63.4
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 5.4e-96 355.1 272 65.4
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.0e-95 353.2 264 63.3
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 4.6e-95 352.1 301 60.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 6.0e-95 351.7 310 60.0
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 6.0e-95 351.7 299 58.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.3e-94 350.5 283 62.2
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.3e-94 349.7 276 62.0
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 3.0e-94 349.4 295 62.0
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 5.0e-94 348.6 309 61.8
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 6.6e-94 348.2 272 62.5
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 8.6e-94 347.8 293 61.8
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 8.6e-94 347.8 295 61.7
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 2.5e-93 346.3 280 63.9
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.5e-93 346.3 272 62.1
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.5e-93 346.3 296 59.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 3.3e-93 345.9 293 58.4
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 7.3e-93 344.7 296 59.5
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 9.5e-93 344.4 299 56.9
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.8e-92 342.8 309 59.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.3e-91 339.7 286 60.8
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.1e-91 339.3 299 60.5
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 5.2e-91 338.6 291 59.8
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 8.9e-91 337.8 307 55.7
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.2e-90 337.4 300 57.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.5e-90 337.0 301 58.8
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 4.4e-90 335.5 284 58.1
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.4e-90 335.5 296 59.8
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 5.8e-90 335.1 321 56.1
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 5.8e-90 335.1 288 60.1
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.5e-90 334.7 279 58.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 9.9e-90 334.3 299 54.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.2e-89 333.2 264 63.6
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.2e-89 333.2 264 62.5
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.9e-89 332.8 281 60.1
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 3.7e-89 332.4 266 61.7
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 6.4e-89 331.6 270 62.2
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 6.4e-89 331.6 266 61.7
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.4e-88 330.5 276 59.1
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 2.4e-88 329.7 280 59.3
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.4e-88 329.7 313 55.3
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 4.1e-88 328.9 284 58.8
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 4.1e-88 328.9 308 56.5
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 9.2e-88 327.8 313 56.5
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.7e-87 326.2 280 59.6
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.7e-87 326.2 290 57.2
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 2.3e-86 323.2 299 60.2
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.5e-85 320.5 266 59.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.5e-85 319.7 284 58.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 5.6e-85 318.5 268 59.0
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 2.8e-84 316.2 269 59.1
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.8e-84 316.2 271 59.0
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.8e-84 316.2 269 56.9
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 8.1e-84 314.7 269 58.4
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.4e-83 313.9 269 58.7
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.4e-83 313.9 268 59.0
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.4e-83 313.2 270 57.8
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 4.0e-83 312.4 309 54.7
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 8.9e-83 311.2 285 54.7
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.2e-82 310.8 277 56.0
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.5e-82 310.5 301 56.1
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.4e-82 309.3 266 57.1
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 7.6e-82 308.1 277 55.2
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 7.6e-82 308.1 299 52.8
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.2e-81 306.6 266 59.8
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.2e-81 306.6 266 59.8
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.9e-81 306.2 270 56.3
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.9e-81 306.2 296 53.7
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.1e-80 304.3 304 54.6
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 4.1e-80 302.4 301 52.5
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.4e-80 302.0 270 56.7
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.2e-79 300.8 285 53.7
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.7e-79 299.7 296 52.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.6e-79 298.9 290 54.5
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.3e-78 297.4 296 52.7
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 5.1e-78 295.4 303 51.8
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.1e-76 290.0 229 65.9
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 2.1e-76 290.0 260 57.3
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.8e-75 287.0 267 54.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.2e-73 280.0 277 54.2
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.4e-72 276.6 288 51.7
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.4e-72 276.6 292 51.4
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.4e-72 276.6 301 50.5
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-71 274.2 202 70.3
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-71 274.2 202 70.3
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.6e-71 272.3 196 72.4
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 6.0e-71 271.9 278 51.8
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 6.0e-71 271.9 292 46.6
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.9e-70 269.2 282 50.4
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 8.7e-70 268.1 310 49.4
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.5e-69 266.5 259 51.7
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 4.3e-69 265.8 295 48.1
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 7.3e-69 265.0 317 45.7
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.8e-68 262.3 308 47.7
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.0e-67 259.2 263 47.1
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 4.0e-67 259.2 201 63.2
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 9.0e-67 258.1 266 48.1
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 2.2e-65 253.4 174 70.7
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 2.4e-64 250.0 271 52.0
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.2e-64 249.6 264 51.1
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 7.1e-64 248.4 298 46.3
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.5e-61 240.7 235 52.3
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.5e-61 240.7 247 51.4
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.2e-57 226.9 300 43.0
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.3e-56 221.5 279 44.4
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.5e-53 214.2 260 43.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.9e-53 213.8 240 45.8
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.5e-53 213.4 260 43.1
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 4.8e-52 209.1 203 54.7
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 4.0e-51 206.1 280 40.4
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.0e-50 203.8 176 58.5
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.2e-48 196.1 283 39.9
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.6e-47 192.6 291 38.8
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.3e-46 191.0 259 41.7
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.1e-43 181.4 262 40.1
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.2e-42 177.9 268 38.1
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 8.2e-28 128.6 98 68.4
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.4e-26 123.2 206 35.0
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.0e-23 112.1 93 61.3
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.0e-23 112.1 93 61.3
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.1e-19 101.7 123 43.9
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 4.1e-19 99.8 97 49.5
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 9.1e-19 98.6 131 42.0
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.9e-17 93.6 206 32.0
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 4.8e-12 76.3 82 40.2
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.8e-12 76.3 196 30.6
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 7.0e-11 72.4 263 25.1
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 3.5e-10 70.1 66 47.0
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.0e-09 68.6 170 29.4


User provided reference genes

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