Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 3.6e-94 348.2 172 100.0
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 4.0e-93 344.7 172 98.8
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 2.0e-81 305.8 176 85.8
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 2.1e-78 295.8 175 83.4
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 3.6e-78 295.0 176 83.0
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 3.6e-78 295.0 176 83.0
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.6e-78 295.0 176 83.0
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 3.6e-78 295.0 176 83.0
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 3.6e-78 295.0 176 83.0
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 3.6e-78 295.0 176 83.0
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.7e-78 294.7 176 83.0
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 4.7e-78 294.7 172 80.8
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 4.7e-78 294.7 176 82.4
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 8.1e-78 293.9 176 82.4
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 8.1e-78 293.9 172 80.8
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 2.3e-77 292.4 176 83.0
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 4.0e-77 291.6 176 81.8
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 4.0e-77 291.6 175 81.7
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 4.0e-77 291.6 177 80.8
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 8.9e-77 290.4 172 82.6
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.5e-76 289.7 172 82.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 2.6e-76 288.9 162 88.3
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 4.4e-76 288.1 173 80.3
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 5.8e-76 287.7 172 82.0
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.7e-75 286.2 177 78.0
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.7e-75 286.2 177 79.7
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 1.7e-75 286.2 177 79.7
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 4.9e-75 284.6 172 82.6
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 4.9e-75 284.6 177 79.7
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 6.4e-75 284.3 177 79.7
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 6.4e-75 284.3 176 77.8
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.1e-74 283.5 176 77.3
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.1e-74 283.5 173 80.3
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.4e-74 282.3 176 77.8
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 4.1e-74 281.6 175 81.1
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 4.1e-74 281.6 177 78.5
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 4.1e-74 281.6 175 80.6
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 5.4e-74 281.2 176 77.8
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.6e-73 279.6 175 81.1
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.6e-73 279.6 175 81.1
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.6e-73 279.6 175 81.1
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.6e-73 279.6 173 79.2
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 2.1e-73 279.3 176 78.4
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 3.5e-73 278.5 177 78.0
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 3.5e-73 278.5 177 78.0
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 6.0e-73 277.7 177 76.3
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 7.8e-73 277.3 176 76.1
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.3e-72 276.6 167 82.0
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.3e-72 276.6 179 74.9
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 1.7e-72 276.2 170 79.4
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.7e-72 276.2 178 76.4
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 3.0e-72 275.4 175 78.9
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 5.1e-72 274.6 167 81.4
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 5.1e-72 274.6 179 74.3
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 6.6e-72 274.2 176 76.7
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 8.6e-72 273.9 175 76.0
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.1e-71 273.5 176 75.0
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.9e-71 272.7 167 79.0
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.5e-71 272.3 174 79.3
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 2.5e-71 272.3 164 82.3
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 2.5e-71 272.3 172 77.3
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.5e-71 272.3 166 81.3
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 3.3e-71 271.9 177 75.1
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.3e-71 271.9 171 80.7
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 5.6e-71 271.2 174 75.9
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 5.6e-71 271.2 181 75.1
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.6e-71 271.2 175 76.0
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 5.6e-71 271.2 177 75.7
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 7.3e-71 270.8 174 75.9
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 7.3e-71 270.8 174 75.9
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 7.3e-71 270.8 178 75.8
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.2e-70 270.0 174 75.9
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.6e-70 269.6 166 81.3
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.6e-70 269.6 175 75.4
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.6e-70 269.6 173 76.3
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 2.1e-70 269.2 175 75.4
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.1e-70 269.2 175 75.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 2.1e-70 269.2 173 75.7
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.8e-70 268.9 176 74.4
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 3.6e-70 268.5 175 74.9
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 4.7e-70 268.1 173 75.7
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 4.7e-70 268.1 172 76.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.7e-70 268.1 177 74.6
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 4.7e-70 268.1 176 73.9
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 8.1e-70 267.3 176 72.7
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.4e-69 266.5 177 74.6
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.4e-69 266.5 176 72.7
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.8e-69 266.2 164 78.0
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.8e-69 266.2 174 74.1
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.8e-69 266.2 172 74.4
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 5.2e-69 264.6 161 80.7
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 8.9e-69 263.8 170 74.7
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 8.9e-69 263.8 168 75.6
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.5e-68 263.1 166 77.1
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 2.0e-68 262.7 167 76.0
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 2.0e-68 262.7 176 75.6
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 5.8e-68 261.2 167 75.4
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 5.8e-68 261.2 167 75.4
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 5.8e-68 261.2 167 75.4
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 5.8e-68 261.2 167 75.4
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.6e-68 260.8 168 75.6
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 7.6e-68 260.8 172 72.7
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 9.9e-68 260.4 172 73.3
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.2e-67 259.2 177 71.8
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.9e-67 258.8 167 76.0
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 3.8e-67 258.5 227 62.6
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 3.8e-67 258.5 175 72.6
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.4e-67 257.7 167 73.7
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 8.4e-67 257.3 166 74.1
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 8.4e-67 257.3 177 71.8
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.4e-67 257.3 171 73.7
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.1e-66 256.9 175 72.6
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 3.2e-66 255.4 166 74.7
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 3.2e-66 255.4 179 69.8
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 7.1e-66 254.2 165 74.5
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 9.2e-66 253.8 167 74.9
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 9.2e-66 253.8 168 73.8
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 1.2e-65 253.4 162 76.5
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 1.2e-65 253.4 162 76.5
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 1.6e-65 253.1 178 69.7
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.1e-65 252.7 167 74.3
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 2.7e-65 252.3 170 71.8
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 3.5e-65 251.9 154 80.5
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 7.8e-65 250.8 175 70.3
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 7.8e-65 250.8 174 68.4
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 8.6e-64 247.3 166 72.9
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 8.6e-64 247.3 177 67.8
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.5e-63 246.5 156 76.9
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 6.2e-62 241.1 157 74.5
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.4e-61 240.0 171 66.1
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 4.0e-61 238.4 157 72.6
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 4.0e-61 238.4 165 67.9
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 3.4e-60 235.3 136 87.5
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 4.4e-60 235.0 173 64.2
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 4.3e-55 218.4 165 64.8
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.6e-54 216.5 164 64.0
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 2.9e-51 205.7 123 82.1
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 2.9e-51 205.7 123 82.1
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 7.1e-50 201.1 119 81.5
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 6.7e-48 194.5 124 76.6
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.5e-47 193.4 121 76.9
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 2.0e-44 183.0 112 78.6
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.7e-43 179.9 116 78.4
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 8.4e-43 177.6 191 48.7
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 2.8e-38 162.5 86 88.4
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 8.2e-38 161.0 170 48.8
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.6e-33 146.7 103 68.9
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.0e-32 144.1 96 69.8
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 8.7e-32 141.0 100 67.0
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 3.1e-29 132.5 96 70.8
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 6.7e-24 114.8 59 86.4
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 5.7e-23 111.7 104 57.7
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 8.2e-22 107.8 162 37.7
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.3e-19 100.5 138 41.3
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 3.8e-19 99.0 193 33.2
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.5e-18 96.3 126 43.7
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.6e-17 93.6 54 85.2
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.9e-16 89.0 85 54.1
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 1.1e-15 87.4 52 84.6
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-15 86.3 95 46.3
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 7.4e-15 84.7 49 83.7
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 6.3e-14 81.6 50 82.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.2e-09 67.4 43 74.4
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 9.7e-07 57.8 35 74.3


User provided reference genes

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