Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 7.6e-112 407.1 199 100.0
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.0e-92 343.6 200 85.5
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 6.0e-85 317.8 212 81.1
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 2.7e-77 292.4 171 83.0
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 8.5e-71 270.8 203 68.0
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 8.2e-66 254.2 169 69.8
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.6e-61 240.0 179 67.0
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 3.6e-61 238.8 215 60.0
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 8.8e-60 234.2 205 60.0
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 8.8e-60 234.2 177 65.5
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 2.0e-59 233.0 190 61.6
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 3.3e-59 232.3 170 65.3
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 3.3e-59 232.3 171 64.9
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 9.7e-59 230.7 173 64.2
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.3e-58 230.3 171 64.3
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.8e-58 228.4 173 63.6
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.8e-58 228.4 173 63.6
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.8e-58 228.4 209 57.4
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 6.3e-58 228.0 199 58.8
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 2.4e-57 226.1 192 57.8
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.1e-57 225.3 173 63.0
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 6.9e-57 224.6 190 60.0
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 5.9e-56 221.5 177 63.3
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 2.2e-55 219.5 213 56.3
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.2e-55 219.5 190 59.5
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 3.8e-55 218.8 215 54.0
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 6.5e-55 218.0 153 67.3
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 8.5e-55 217.6 216 56.9
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.1e-54 217.2 181 61.3
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 3.2e-54 215.7 196 57.7
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 4.2e-54 215.3 209 54.1
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 7.2e-54 214.5 190 59.5
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.6e-53 213.4 174 60.3
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.6e-53 213.4 184 63.0
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 2.1e-53 213.0 202 53.0
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 4.7e-53 211.8 193 56.5
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.4e-52 210.3 177 59.9
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.8e-52 209.9 190 58.9
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 1.8e-52 209.9 195 56.4
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.8e-52 209.9 177 59.9
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 2.3e-52 209.5 176 59.7
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 2.3e-52 209.5 180 58.9
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 5.2e-52 208.4 176 59.7
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 5.2e-52 208.4 203 56.2
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.1e-51 207.2 182 55.5
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.5e-51 206.8 184 58.7
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 2.0e-51 206.5 160 64.4
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 2.6e-51 206.1 176 56.2
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 4.4e-51 205.3 178 59.6
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 3.7e-50 202.2 178 57.9
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 4.8e-50 201.8 189 53.4
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 6.3e-50 201.4 186 58.6
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 6.3e-50 201.4 170 58.8
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 8.2e-50 201.1 175 53.1
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.4e-49 200.3 206 53.4
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 1.8e-49 199.9 198 50.5
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 2.4e-49 199.5 199 52.3
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 3.1e-49 199.1 185 56.2
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 4.1e-49 198.7 179 60.3
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 9.1e-49 197.6 177 57.6
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 9.1e-49 197.6 204 52.9
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.2e-48 197.2 197 53.8
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.6e-48 196.8 180 54.4
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 2.0e-48 196.4 174 58.0
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 2.6e-48 196.1 204 54.4
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.6e-48 196.1 170 58.8
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 3.5e-48 195.7 185 55.7
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 4.5e-48 195.3 175 53.1
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 5.9e-48 194.9 191 53.9
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 7.7e-48 194.5 191 56.0
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.3e-47 193.7 188 55.9
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.7e-47 193.4 182 57.7
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.7e-47 193.4 215 51.2
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 1.9e-46 189.9 190 52.6
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 2.5e-46 189.5 191 52.9
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 3.2e-46 189.1 169 55.0
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 3.2e-46 189.1 175 56.0
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 4.2e-46 188.7 167 56.3
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 4.2e-46 188.7 175 52.0
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 5.5e-46 188.3 198 51.5
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 5.5e-46 188.3 163 58.9
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 9.4e-46 187.6 174 56.3
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 2.1e-45 186.4 193 48.2
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 2.1e-45 186.4 113 76.1
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 3.6e-45 185.7 199 51.8
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 6.1e-45 184.9 196 51.0
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 8.0e-45 184.5 200 50.5
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.4e-44 183.7 200 49.5
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.4e-44 183.7 167 55.1
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 3.0e-44 182.6 194 52.1
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 3.0e-44 182.6 194 52.1
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 3.0e-44 182.6 194 52.1
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 4.0e-44 182.2 194 52.1
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 4.0e-44 182.2 194 52.1
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 4.0e-44 182.2 201 50.2
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.2e-43 180.6 193 51.8
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.5e-43 180.3 207 49.8
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 4.4e-43 178.7 231 46.3
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 5.7e-43 178.3 182 57.1
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.7e-42 176.8 213 47.9
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 6.3e-42 174.9 183 53.6
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.4e-41 173.7 228 45.2
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.1e-41 172.6 228 45.6
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 7.0e-41 171.4 164 51.2
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 3.5e-40 169.1 175 51.4
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 6.5e-39 164.9 229 43.7
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.5e-38 163.7 177 46.3
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 3.2e-38 162.5 177 46.3
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 4.2e-38 162.2 133 66.9
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.2e-37 160.6 128 60.9
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.2e-37 160.6 163 49.1
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 8.0e-37 157.9 137 54.7
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 4.0e-36 155.6 307 36.5
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 7.5e-35 151.4 138 52.9
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.3e-34 150.6 138 56.5
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.8e-34 148.7 188 42.6
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.8e-34 148.7 197 40.6
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 4.8e-34 148.7 168 48.8
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 1.8e-33 146.7 145 52.4
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.8e-33 146.7 192 41.7
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 5.4e-33 145.2 207 43.5
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 9.1e-33 144.4 209 40.7
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.5e-32 142.1 173 45.7
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 7.7e-32 141.4 135 51.9
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 5.0e-31 138.7 182 46.2
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 1.2e-29 134.0 144 47.2
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.1e-29 133.3 154 43.5
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 4.7e-29 132.1 182 42.3
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 1.0e-28 131.0 293 34.1
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 4.4e-27 125.6 172 44.2
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.8e-25 120.2 202 43.1
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.8e-25 120.2 202 43.1
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 9.2e-25 117.9 101 56.4
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.6e-24 117.1 167 40.1
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.0e-24 116.7 202 42.6
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 4.5e-24 115.5 98 54.1
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 4.5e-24 115.5 175 40.0
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.3e-23 114.0 185 40.0
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 5.0e-23 112.1 104 51.9
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.6e-23 111.7 189 32.3
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 3.3e-22 109.4 133 45.9
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 1.6e-21 107.1 163 42.3
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.6e-21 107.1 193 34.7
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.4e-20 104.0 190 33.2
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 4.0e-20 102.4 71 67.6
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.7e-18 97.1 125 36.8
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.2e-18 96.7 125 46.4
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.4e-17 94.0 133 43.6
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 8.0e-13 78.2 244 25.8
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 2.3e-12 76.6 108 40.7
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 3.1e-12 76.3 64 59.4
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.6e-08 63.9 130 33.1
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.7e-08 63.2 57 57.9


User provided reference genes

Program Settings