Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.1e-62 243.0 120 100.0
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.2e-35 153.3 120 62.5
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.9e-34 148.7 122 61.5
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 4.7e-32 141.4 120 59.2
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 4.7e-32 141.4 120 58.3
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 8.2e-29 130.6 117 56.4
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 8.0e-24 114.0 119 50.4
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.5e-22 109.8 121 50.4
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.7e-21 105.1 125 48.8
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.1e-20 103.6 117 50.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.8e-20 102.8 129 46.5
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 4.1e-20 101.7 106 52.8
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.3e-20 101.3 127 45.7
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 5.3e-20 101.3 110 53.6
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 7.0e-20 100.9 112 54.5
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.6e-19 99.8 129 45.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.5e-19 98.6 109 49.5
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.5e-19 98.6 119 47.1
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.5e-19 98.6 116 51.7
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.5e-19 98.6 118 46.6
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 4.5e-19 98.2 123 48.0
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 5.9e-19 97.8 129 47.3
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 5.9e-19 97.8 119 43.7
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 7.7e-19 97.4 118 46.6
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 7.7e-19 97.4 86 54.7
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 2.2e-18 95.9 120 45.8
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 2.9e-18 95.5 130 45.4
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.8e-18 95.1 128 44.5
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.8e-18 95.1 109 49.5
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.8e-18 95.1 117 44.4
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 5.0e-18 94.7 119 45.4
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.5e-18 94.4 117 45.3
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 8.5e-18 94.0 127 47.2
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 8.5e-18 94.0 116 50.9
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.5e-17 93.2 119 44.5
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.9e-17 92.8 126 43.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 2.5e-17 92.4 126 43.7
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.5e-17 92.4 112 50.9
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.2e-17 91.7 131 42.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.2e-17 91.7 131 42.0
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.5e-17 91.3 107 47.7
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.5e-17 91.3 126 48.4
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 9.4e-17 90.5 131 42.0
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.2e-16 90.1 131 41.2
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.2e-16 90.1 120 45.0
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.1e-16 89.4 109 45.9
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.7e-16 89.0 109 45.9
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 6.1e-16 87.8 128 43.0
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.1e-16 87.8 110 50.0
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.4e-15 86.7 131 42.7
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.8e-15 86.3 119 46.2
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 3.0e-15 85.5 138 36.2
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 5.2e-15 84.7 122 41.0
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 5.2e-15 84.7 120 40.0
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 8.8e-15 84.0 123 38.2
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-14 83.6 127 38.6
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.0e-14 82.8 132 37.1
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.0e-14 82.8 105 45.7
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 3.4e-14 82.0 117 43.6
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 4.4e-14 81.6 128 38.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 4.4e-14 81.6 128 38.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 4.4e-14 81.6 128 38.3
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.4e-14 81.6 128 35.9
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 5.7e-14 81.3 122 43.4
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.3e-13 80.1 124 42.7
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.3e-13 80.1 126 37.3
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.3e-13 80.1 126 38.9
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.7e-13 79.7 135 41.5
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.2e-13 79.3 128 35.2
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 2.8e-13 79.0 120 41.7
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 3.7e-13 78.6 119 42.0
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.8e-13 78.2 128 35.2
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 4.8e-13 78.2 128 43.8
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.3e-13 77.8 126 40.5
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 6.3e-13 77.8 128 42.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 6.3e-13 77.8 128 41.4
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 6.3e-13 77.8 116 39.7
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 6.3e-13 77.8 112 45.5
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.3e-13 77.4 128 42.2
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 8.3e-13 77.4 125 37.6
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 8.3e-13 77.4 125 37.6
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 8.3e-13 77.4 119 40.3
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 8.3e-13 77.4 127 35.4
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-12 77.0 122 37.7
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-12 77.0 123 41.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.4e-12 76.6 110 46.4
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.4e-12 76.6 119 42.9
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.8e-12 76.3 128 34.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-12 76.3 128 36.7
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.8e-12 76.3 128 36.7
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.8e-12 76.3 120 41.7
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.8e-12 76.3 107 40.2
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 2.4e-12 75.9 122 36.9
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.1e-12 75.5 128 40.6
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 3.1e-12 75.5 119 40.3
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 3.1e-12 75.5 123 38.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.1e-12 75.5 127 39.4
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 4.1e-12 75.1 53 56.6
Lsat_1_v5_gn_9_118581 Lactuca sativa HOM05D003805 ORTHO05D004300 4.1e-12 75.1 68 54.4
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.1e-12 75.1 126 37.3
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 4.1e-12 75.1 124 38.7
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 5.4e-12 74.7 128 35.2
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 5.4e-12 74.7 123 39.8
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.1e-12 73.9 130 34.6
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.2e-11 73.6 131 34.4
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.6e-11 73.2 124 37.1
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-11 73.2 120 39.2
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-11 72.8 125 34.4
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 2.0e-11 72.8 121 35.5
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 2.0e-11 72.8 125 40.0
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 2.0e-11 72.8 122 39.3
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.7e-11 72.4 125 40.8
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 2.7e-11 72.4 120 38.3
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.7e-11 72.4 128 38.3
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.7e-11 72.4 125 40.0
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.5e-11 72.0 125 40.8
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 3.5e-11 72.0 123 39.0
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 4.5e-11 71.6 128 34.4
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 4.5e-11 71.6 125 40.0
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.5e-11 71.6 132 36.4
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 5.9e-11 71.2 110 40.0
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 7.7e-11 70.9 125 39.2
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.7e-11 70.9 125 39.2
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 7.7e-11 70.9 111 39.6
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-10 70.1 125 39.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-10 70.1 125 39.2
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.3e-10 70.1 121 38.0
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.7e-10 69.7 126 34.1
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-10 69.7 125 32.8
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.7e-10 69.7 110 37.3
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.7e-10 69.7 125 38.4
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.7e-10 69.7 134 34.3
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-10 69.3 125 39.2
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-10 69.3 125 39.2
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-10 69.3 125 32.8
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.3e-10 69.3 132 33.3
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.3e-10 69.3 125 39.2
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.3e-10 69.3 109 42.2
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.3e-10 69.3 124 39.5
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 2.3e-10 69.3 127 38.6
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-10 68.9 124 39.5
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-10 68.9 125 37.6
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-10 68.9 125 38.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-10 68.9 124 39.5
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 2.9e-10 68.9 124 39.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.9e-10 68.9 125 40.0
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.8e-10 68.6 124 34.7
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 3.8e-10 68.6 128 35.9
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.8e-10 68.6 125 37.6
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.8e-10 68.6 125 37.6
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.8e-10 68.6 125 40.0
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 5.0e-10 68.2 125 37.6
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 5.0e-10 68.2 125 38.4
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 5.0e-10 68.2 125 40.0
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 5.0e-10 68.2 125 37.6
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 5.0e-10 68.2 125 37.6
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 5.0e-10 68.2 125 40.0
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 6.6e-10 67.8 124 38.7
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.6e-10 67.8 123 36.6
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 8.6e-10 67.4 123 39.8
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 8.6e-10 67.4 125 40.0
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 8.6e-10 67.4 125 40.0
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 8.6e-10 67.4 127 35.4
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.5e-09 66.6 124 40.3
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 4.2e-09 65.1 156 28.8
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.2e-08 63.5 127 34.6
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-08 63.2 127 31.5
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 1.6e-08 63.2 127 31.5
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 1.6e-08 63.2 127 31.5
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-08 62.0 116 34.5
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-08 62.0 116 34.5
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-08 62.0 116 34.5
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-07 59.7 150 28.0
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.0e-07 58.5 54 46.3
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 5.2e-07 58.2 108 40.7
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 3.4e-06 55.5 122 33.6
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 5.7e-06 54.7 54 48.1
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 9.8e-06 53.9 38 55.3


User provided reference genes

Program Settings