Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 0.0e+00 1100.1 593 100.0
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 4.1e-312 1074.7 597 97.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 2.4e-278 961.8 598 86.5
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 5.5e-275 950.7 595 84.0
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 3.5e-274 948.0 588 83.0
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 5.1e-273 944.1 594 83.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 5.1e-273 944.1 594 83.8
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 4.5e-269 931.0 598 84.1
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 7.9e-266 920.2 594 80.1
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 5.7e-264 914.1 595 80.3
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.8e-263 911.8 599 80.3
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 6.3e-263 910.6 596 79.4
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 3.1e-262 908.3 599 79.1
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.1e-262 908.3 598 83.3
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.1e-262 908.3 596 78.7
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.4e-261 904.8 596 80.0
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 2.9e-260 901.7 596 78.2
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 2.9e-260 901.7 596 78.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 4.2e-259 897.9 596 78.9
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.0e-257 891.7 598 77.3
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.6e-256 888.6 597 79.2
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 4.4e-256 887.9 595 78.8
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.2e-255 885.6 596 78.9
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 4.8e-255 884.4 593 79.1
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 5.3e-254 880.9 598 79.6
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 5.9e-253 877.5 593 76.7
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.7e-253 877.1 592 76.0
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.7e-252 875.9 595 77.6
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.7e-252 875.9 598 79.6
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 2.5e-251 872.1 586 79.0
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.2e-251 871.3 596 77.9
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 5.5e-251 870.9 595 79.7
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 7.2e-251 870.5 596 77.9
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.2e-250 869.8 596 77.0
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.2e-250 869.8 594 77.3
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 7.9e-250 867.1 598 76.6
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.9e-250 867.1 593 75.9
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.7e-247 859.4 594 76.9
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 2.2e-247 859.0 603 77.9
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.8e-246 855.9 594 75.4
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.4e-246 855.5 600 78.5
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.2e-245 853.2 592 75.3
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.0e-245 852.4 603 71.0
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.0e-245 852.4 603 71.0
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.0e-245 852.4 594 75.3
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.6e-245 852.0 595 73.9
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.6e-245 852.0 594 75.8
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 5.9e-245 850.9 609 73.4
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.3e-244 849.7 602 75.2
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.7e-244 849.4 602 74.8
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.9e-244 848.6 596 74.2
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.9e-243 845.9 597 75.0
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 2.5e-243 845.5 606 73.4
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 3.2e-243 845.1 601 74.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 7.2e-243 844.0 599 75.1
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.2e-242 843.2 593 75.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.7e-242 842.0 598 73.4
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.0e-241 840.1 593 74.5
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.3e-241 839.0 600 73.3
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.3e-241 839.0 600 73.2
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 3.0e-241 838.6 599 74.8
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.0e-241 838.2 600 73.0
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.0e-240 835.9 621 68.6
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 6.3e-239 830.9 593 75.5
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 8.2e-239 830.5 598 74.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.4e-238 829.7 596 73.5
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 9.1e-238 827.0 592 73.5
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 9.1e-238 827.0 592 73.5
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 9.1e-238 827.0 592 73.5
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 3.5e-237 825.1 597 73.5
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.5e-237 824.7 600 72.2
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 4.5e-237 824.7 606 72.9
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-236 823.5 600 72.2
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.3e-236 823.2 596 71.6
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.8e-236 821.6 602 72.3
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 6.5e-236 820.8 601 73.0
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 6.5e-236 820.8 600 71.3
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 8.5e-236 820.5 592 72.0
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 8.5e-236 820.5 592 72.0
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.9e-235 819.3 599 72.3
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.2e-235 818.5 599 71.6
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 3.2e-235 818.5 600 72.7
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 4.2e-235 818.1 597 73.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 4.2e-235 818.1 600 71.5
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.0e-233 813.5 596 72.3
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.0e-233 812.0 600 72.3
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.5e-232 809.7 597 76.2
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 2.0e-232 809.3 615 71.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.4e-232 808.5 604 69.2
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 4.4e-232 808.1 596 71.1
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 7.0e-230 800.8 602 70.6
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 7.7e-229 797.3 606 69.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.0e-228 797.0 586 70.8
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.7e-228 796.2 592 70.1
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.3e-228 795.8 592 69.6
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.5e-228 794.3 602 71.1
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 4.2e-227 791.6 871 53.8
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 7.2e-227 790.8 594 73.1
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.6e-226 789.6 609 70.9
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 7.5e-224 780.8 596 71.8
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 7.5e-224 780.8 591 71.6
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.3e-223 780.0 592 71.6
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 2.8e-223 778.9 604 70.4
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 7.3e-219 764.2 591 71.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.8e-217 759.6 602 69.6
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 2.6e-216 755.7 592 66.7
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 7.5e-216 754.2 544 73.0
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.7e-215 753.1 644 66.3
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-213 746.1 556 68.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 5.6e-211 738.0 592 65.0
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 5.6e-211 738.0 606 66.2
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.4e-206 723.4 610 65.6
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 7.0e-206 721.1 610 65.4
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.5e-203 710.7 600 65.2
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 4.7e-202 708.4 618 63.3
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.4e-198 696.8 596 63.8
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 4.1e-198 695.3 591 65.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.7e-197 692.6 602 63.3
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.8e-181 637.9 567 60.7
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.9e-173 611.3 475 69.9
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.0e-164 584.3 441 72.6
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.3e-164 583.9 516 65.5
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.8e-154 549.7 598 54.3
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.6e-149 533.9 603 51.2
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 5.3e-145 518.8 595 48.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 4.4e-139 499.2 597 50.3
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 5.9e-128 462.2 597 50.6
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.2e-122 443.7 614 43.0
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.6e-115 420.2 588 42.5
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.5e-91 339.0 243 70.8
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.1e-88 330.9 209 78.0
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 2.4e-73 280.8 625 37.1
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 6.0e-72 276.2 323 50.2
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.3e-62 242.7 265 54.3
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 2.1e-61 241.1 234 61.5
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 4.9e-58 229.9 598 28.8
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 3.5e-48 197.2 148 68.2
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 5.7e-38 163.3 151 58.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.3e-29 135.6 98 68.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.2e-27 129.0 627 27.0
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.9e-25 121.7 201 39.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.6e-24 117.5 72 77.8
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 9.7e-22 109.4 78 64.1
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 8.2e-21 106.3 78 62.8
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 6.5e-18 96.7 107 45.8
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 3.2e-17 94.4 209 45.0
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.8e-12 78.6 90 42.2
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.4e-12 78.2 59 66.1


User provided reference genes

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