Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 3.4e-80 301.6 153 100.0
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 5.2e-52 208.0 148 75.0
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 5.6e-38 161.4 114 72.8
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 1.2e-29 133.7 137 51.1
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 3.5e-24 115.5 125 52.0
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 3.5e-24 115.5 141 46.8
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 4.6e-24 115.2 114 50.9
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 1.9e-22 109.8 141 43.3
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 3.3e-22 109.0 120 50.8
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 5.6e-22 108.2 117 53.0
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 9.5e-22 107.5 140 45.7
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 1.2e-21 107.1 143 44.8
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 1.2e-21 107.1 141 41.1
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 2.1e-21 106.3 144 45.8
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 2.8e-21 105.9 117 53.0
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 2.8e-21 105.9 120 52.5
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 6.2e-21 104.8 129 47.3
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 1.4e-20 103.6 137 43.8
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.8e-20 103.2 110 53.6
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 1.8e-20 103.2 139 43.2
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 2.3e-20 102.8 127 44.1
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 2.3e-20 102.8 137 45.3
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 5.2e-20 101.7 127 45.7
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 3.4e-19 99.0 126 46.0
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 3.4e-19 99.0 134 46.3
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 3.4e-19 99.0 105 52.4
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 4.4e-19 98.6 108 50.9
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 5.8e-19 98.2 147 40.8
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 9.8e-19 97.4 118 47.5
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 2.2e-18 96.3 108 50.0
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 3.7e-18 95.5 106 50.9
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 6.4e-18 94.7 109 51.4
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 1.1e-17 94.0 137 45.3
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 1.1e-17 94.0 146 42.5
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 1.4e-17 93.6 124 44.4
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 2.4e-17 92.8 140 43.6
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 4.1e-17 92.0 126 46.0
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 4.1e-17 92.0 107 53.3
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 5.4e-17 91.7 73 58.9
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 7.1e-17 91.3 122 41.8
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 1.6e-16 90.1 140 41.4
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 7.8e-16 87.8 98 49.0
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 2.3e-15 86.3 126 38.1
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 2.3e-15 86.3 98 46.9
Medtr5g079600 Medicago truncatula HOM05D008294 ORTHO05D010468 8.6e-15 84.3 124 41.1
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 8.6e-15 84.3 125 40.0
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 8.6e-15 84.3 136 40.4
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 1.1e-14 84.0 101 48.5
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 1.9e-14 83.2 167 37.1
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 3.3e-14 82.4 151 34.4
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 3.3e-14 82.4 151 34.4
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 7.3e-14 81.3 170 34.1
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 6.8e-12 74.7 119 42.0
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 2.6e-11 72.8 79 49.4
Psat2g041240 Pisum sativum HOM05D008294 ORTHO05D010468 7.6e-11 71.2 117 35.9
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 8.4e-10 67.8 84 41.7
TPR.G3487 Trifolium pratense HOM05D008294 ORTHO05D010468 1.9e-09 66.6 105 34.3
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 4.1e-09 65.5 90 38.9
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 1.2e-08 63.9 86 38.4
Peaxi162Scf00015g00069 Petunia axillaris HOM05D002803 ORTHO05D003089 1.2e-08 63.9 95 36.8
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 4.6e-08 62.0 144 27.8
Sed0002511 Sechium edule HOM05D002803 ORTHO05D003089 1.0e-07 60.8 58 46.6
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 2.3e-07 59.7 77 40.3
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 3.0e-07 59.3 75 42.7
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 3.0e-07 59.3 39 61.5
MSTRG.2266 Avicennia marina HOM05D002803 ORTHO05D003089 5.1e-07 58.5 134 32.1
Pp3c4_18190 Physcomitrium patens HOM05D035914 ORTHO05D010468 5.1e-07 58.5 138 30.4
Ciclev10022495m.g Citrus clementina HOM05D002803 ORTHO05D003089 6.6e-07 58.2 83 36.1
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 6.6e-07 58.2 39 56.4
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 6.6e-07 58.2 115 34.8
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 8.6e-07 57.8 46 47.8
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 1.1e-06 57.4 80 37.5
Cc04_g07570 Coffea canephora HOM05D002803 ORTHO05D003089 1.1e-06 57.4 76 43.4
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 1.1e-06 57.4 86 36.0
CSS0037901 Camellia sinensis var. sinensis HOM05D002803 ORTHO05D003089 1.5e-06 57.0 93 34.4
Lj3P1020T26 Lonicera japonica HOM05D002803 ORTHO05D003089 1.5e-06 57.0 57 47.4
Sabra12G0042700 Salix brachista HOM05D002803 ORTHO05D003089 1.5e-06 57.0 85 37.6
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 1.9e-06 56.6 55 45.5
Ah.02g127220 Amaranthus hybridus HOM05D002803 ORTHO05D003089 1.9e-06 56.6 37 59.5
Eucgr.K02652 Eucalyptus grandis HOM05D002803 ORTHO05D003089 1.9e-06 56.6 79 41.8
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.9e-06 56.6 80 36.2
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.9e-06 56.6 80 36.2
Hma1.2p1_0340F.1_g129940 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 1.9e-06 56.6 103 32.0
Medtr1g093840 Medicago truncatula HOM05D002803 ORTHO05D003089 1.9e-06 56.6 39 53.8
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 1.9e-06 56.6 74 37.8
Potri.012G059500 Populus trichocarpa HOM05D002803 ORTHO05D003089 1.9e-06 56.6 133 31.6
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 1.9e-06 56.6 91 38.5
HanXRQChr12g0374281 Helianthus annuus HOM05D002803 ORTHO05D003089 2.5e-06 56.2 69 40.6
Sopen03g038670 Solanum pennellii HOM05D002803 ORTHO05D003089 2.5e-06 56.2 75 37.3
HPP92_026410 Vanilla planifolia HOM05D002803 ORTHO05D003089 2.5e-06 56.2 46 54.3
Cpa.g.sc13.62 Carica papaya HOM05D002803 ORTHO05D003089 3.3e-06 55.8 74 31.1
CiPaw.16G083600 Carya illinoinensis HOM05D002803 ORTHO05D003089 3.3e-06 55.8 34 61.8
Haze_18600 Corylus avellana HOM05D002803 ORTHO05D003089 3.3e-06 55.8 73 41.1
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 3.3e-06 55.8 72 40.3
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 3.3e-06 55.8 39 51.3
Medtr4g077777 Medicago truncatula HOM05D002803 ORTHO05D003089 3.3e-06 55.8 75 44.0
Prupe.5G216600 Prunus persica HOM05D002803 ORTHO05D003089 3.3e-06 55.8 102 33.3
Rhsim12G0080900 Rhododendron simsii HOM05D002803 ORTHO05D003089 3.3e-06 55.8 52 53.8
HPP92_023771 Vanilla planifolia HOM05D002803 ORTHO05D003089 3.3e-06 55.8 46 54.3
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 4.3e-06 55.5 51 47.1
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 4.3e-06 55.5 129 30.2
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 4.3e-06 55.5 80 35.0
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 4.3e-06 55.5 43 53.5
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 4.3e-06 55.5 75 36.0
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 4.3e-06 55.5 40 50.0
Ah.03g137920 Amaranthus hybridus HOM05D002803 ORTHO05D003089 5.6e-06 55.1 48 52.1
Ah.11g047160 Amaranthus hybridus HOM05D002803 ORTHO05D003089 5.6e-06 55.1 57 47.4
Aqoxy3G03897 Aquilegia oxysepala HOM05D002803 ORTHO05D003089 5.6e-06 55.1 97 36.1
AT1G49000 Arabidopsis thaliana HOM05D002803 ORTHO05D003089 5.6e-06 55.1 84 33.3
arahy.Tifrunner.gnm1.ann1.DV8J5Z Arachis hypogaea HOM05D002803 ORTHO05D003089 5.6e-06 55.1 73 41.1
arahy.Tifrunner.gnm1.ann1.WSMZ37 Arachis hypogaea HOM05D002803 ORTHO05D003089 5.6e-06 55.1 73 41.1
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 5.6e-06 55.1 71 38.0
Lalb_Chr08g0235031 Lupinus albus HOM05D002803 ORTHO05D003089 5.6e-06 55.1 62 41.9
Nitab4.5_0000410g0140 Nicotiana tabacum HOM05D002803 ORTHO05D003089 5.6e-06 55.1 71 38.0
Sed0001062 Sechium edule HOM05D002803 ORTHO05D003089 5.6e-06 55.1 70 38.6
THA.LOC104801662 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 5.6e-06 55.1 85 36.5
VMungo1309G1453 Vigna mungo HOM05D002803 ORTHO05D003089 5.6e-06 55.1 69 42.0
CiPaw.15G125800 Carya illinoinensis HOM05D002803 ORTHO05D003089 7.3e-06 54.7 82 39.0
Peaxi162Scf00367g00712 Petunia axillaris HOM05D002803 ORTHO05D003089 7.3e-06 54.7 100 35.0
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 7.3e-06 54.7 96 33.3
Sopen06g026510 Solanum pennellii HOM05D002803 ORTHO05D003089 7.3e-06 54.7 74 40.5
SGA_v2.0_scaffold16G07882 Striga asiatica HOM05D002803 ORTHO05D003089 7.3e-06 54.7 124 32.3
CsaV3_1G006470 Cucumis sativus L. HOM05D002803 ORTHO05D003089 9.6e-06 54.3 54 42.6
Dinv36899 Davidia involucrata HOM05D002803 ORTHO05D003089 9.6e-06 54.3 54 42.6
Glyma.04G145700 Glycine max HOM05D002803 ORTHO05D003089 9.6e-06 54.3 69 43.5
Glyma.06G210200 Glycine max HOM05D002803 ORTHO05D003089 9.6e-06 54.3 69 43.5
QL10p023060 Quercus lobata HOM05D002803 ORTHO05D003089 9.6e-06 54.3 50 48.0
SEGI_10730 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 9.6e-06 54.3 138 28.3


User provided reference genes

Program Settings