Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 1.2e-92 343.2 175 100.0
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 2.2e-67 259.2 175 75.4
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 6.5e-67 257.7 171 76.6
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 1.1e-66 256.9 169 75.1
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 2.5e-66 255.8 168 74.4
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 2.5e-66 255.8 168 74.4
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 2.5e-66 255.8 168 74.4
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 3.2e-66 255.4 168 74.4
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 4.2e-66 255.0 159 77.4
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 7.2e-66 254.2 175 72.6
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 7.2e-66 254.2 175 72.6
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 9.4e-66 253.8 172 73.8
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 1.2e-65 253.4 168 73.8
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 1.2e-65 253.4 168 74.4
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 2.1e-65 252.7 167 73.7
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 2.1e-65 252.7 163 74.8
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 2.1e-65 252.7 163 74.8
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 2.1e-65 252.7 163 74.8
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 2.1e-65 252.7 163 74.8
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 8.0e-65 250.8 163 74.2
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 1.8e-64 249.6 169 73.4
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 2.3e-64 249.2 175 77.7
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 3.9e-64 248.4 167 74.9
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 5.2e-64 248.1 159 76.7
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 6.7e-64 247.7 156 76.9
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 1.1e-63 246.9 166 74.7
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 1.5e-63 246.5 175 72.0
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 2.0e-63 246.1 161 78.3
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 2.0e-63 246.1 168 71.4
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 2.6e-63 245.7 170 70.6
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 2.6e-63 245.7 149 81.2
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 3.3e-63 245.4 161 78.3
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 4.4e-63 245.0 175 70.9
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 4.4e-63 245.0 175 70.9
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 4.4e-63 245.0 175 70.9
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 5.7e-63 244.6 169 70.4
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 5.7e-63 244.6 169 70.4
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.3e-62 243.4 175 70.3
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 1.7e-62 243.0 165 73.3
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 2.2e-62 242.7 160 73.1
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 3.7e-62 241.9 171 71.3
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 3.7e-62 241.9 173 69.9
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 1.4e-61 240.0 175 68.0
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 1.8e-61 239.6 169 71.0
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 4.1e-61 238.4 171 71.3
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 5.3e-61 238.0 171 71.9
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 3.5e-60 235.3 173 67.1
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 3.5e-60 235.3 161 70.8
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 3.5e-60 235.3 165 72.7
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 7.7e-60 234.2 170 68.2
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 2.2e-59 232.6 171 69.0
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 2.9e-59 232.3 169 69.2
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 6.5e-59 231.1 171 69.0
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 6.5e-59 231.1 155 72.3
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 8.5e-59 230.7 144 77.1
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 8.5e-59 230.7 159 74.2
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 1.1e-58 230.3 171 70.2
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 1.5e-58 229.9 169 67.5
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 2.5e-58 229.2 159 73.6
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 2.5e-58 229.2 159 73.6
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 3.2e-58 228.8 169 69.2
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 4.2e-58 228.4 174 69.5
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 4.2e-58 228.4 171 69.0
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 5.5e-58 228.0 169 66.9
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 7.2e-58 227.6 157 70.1
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 7.2e-58 227.6 157 70.1
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 9.4e-58 227.3 171 67.8
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 1.2e-57 226.9 175 68.6
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 1.6e-57 226.5 169 67.5
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 2.1e-57 226.1 161 72.0
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 3.6e-57 225.3 169 69.8
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 6.1e-57 224.6 171 68.4
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 8.0e-57 224.2 169 65.1
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 1.4e-56 223.4 172 68.0
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 1.4e-56 223.4 161 71.4
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 1.8e-56 223.0 176 67.6
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 5.2e-56 221.5 158 70.9
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 5.2e-56 221.5 170 66.5
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 6.8e-56 221.1 172 67.4
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 6.8e-56 221.1 175 66.3
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 6.8e-56 221.1 154 72.1
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 8.8e-56 220.7 174 64.4
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 1.2e-55 220.3 157 68.2
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 1.5e-55 219.9 174 64.4
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 2.0e-55 219.5 144 74.3
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 2.0e-55 219.5 171 68.4
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 2.0e-55 219.5 170 65.3
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 2.0e-55 219.5 170 65.3
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 2.6e-55 219.2 174 66.7
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 1.3e-54 216.9 171 67.3
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.7e-54 216.5 170 65.3
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.2e-54 216.1 172 64.0
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 2.8e-54 215.7 156 70.5
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.8e-54 215.7 172 64.0
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 4.8e-54 214.9 220 54.1
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 7.0e-53 211.1 170 64.1
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 2.7e-52 209.1 169 64.5
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 2.7e-52 209.1 169 64.5
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 4.5e-52 208.4 169 64.5
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 1.0e-51 207.2 173 62.4
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 1.7e-51 206.5 172 61.6
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 2.9e-51 205.7 140 71.4
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 6.1e-49 198.0 138 71.7
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 8.0e-49 197.6 164 57.3
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 2.3e-48 196.1 119 79.8
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 9.8e-47 190.7 179 57.5
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 1.3e-46 190.3 139 67.6
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 4.1e-45 185.3 155 63.2
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 5.4e-45 184.9 161 55.3
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 2.0e-44 183.0 124 70.2
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 2.7e-44 182.6 167 56.3
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 5.9e-44 181.4 131 71.0
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 7.7e-44 181.0 139 65.5
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 5.0e-43 178.3 145 64.8
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 1.1e-42 177.2 111 78.4
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 2.5e-42 176.0 138 67.4
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 3.3e-42 175.6 172 58.1
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 5.6e-42 174.9 130 66.2
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 7.2e-42 174.5 140 60.0
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 9.5e-42 174.1 140 62.1
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 9.5e-42 174.1 140 62.1
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 1.2e-41 173.7 141 64.5
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 6.1e-41 171.4 127 67.7
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 3.0e-40 169.1 169 54.4
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 5.2e-40 168.3 141 63.1
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 7.5e-39 164.5 121 66.9
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 2.8e-33 146.0 96 75.0
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 3.6e-33 145.6 156 47.4
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 8.0e-33 144.4 147 55.8
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 8.0e-33 144.4 147 55.8
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 1.8e-32 143.3 89 77.5
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 2.3e-32 142.9 149 57.0
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 3.4e-31 139.0 95 70.5
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 4.4e-31 138.7 82 81.7
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 1.7e-30 136.7 95 68.4
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 4.6e-28 128.6 152 48.0
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 2.8e-25 119.4 147 43.5
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 2.0e-23 113.2 163 39.9
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 9.8e-23 110.9 114 52.6
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 1.4e-21 107.1 65 81.5
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 1.5e-18 97.1 81 63.0
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 9.5e-18 94.4 172 33.7
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.2e-17 94.0 86 58.1
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 1.9e-10 70.1 76 52.6
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 2.5e-10 69.7 85 43.5
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 6.8e-08 61.6 56 57.1
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 8.9e-08 61.2 38 73.7
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.5e-07 60.5 53 62.3
DCAR_027921 Daucus carota HOM05D004936 ORTHO05D005977 2.0e-07 60.1 50 54.0
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 4.4e-07 58.9 29 93.1
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 1.3e-06 57.4 29 89.7
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 1.3e-06 57.4 57 57.9
SEGI_05638 Sequoiadendron giganteum HOM05D004024 ORTHO05D004639 1.3e-06 57.4 138 33.3
Medtr2g070300 Medicago truncatula HOM05D004936 ORTHO05D005977 2.2e-06 56.6 30 76.7
DCAR_013207 Daucus carota HOM05D001671 ORTHO05D004639 8.4e-06 54.7 72 40.3


User provided reference genes

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