Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0439691 Helianthus annuus HOM05D003515 ORTHO05D004347 2.1e-100 369.0 184 100.0
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 5.6e-93 344.4 188 93.1
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 1.8e-83 312.8 188 84.6
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 3.5e-79 298.5 193 78.8
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 4.6e-79 298.1 188 80.9
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 3.0e-78 295.4 188 79.8
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 1.1e-77 293.5 188 79.8
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.9e-77 292.7 193 77.2
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 4.3e-77 291.6 188 80.3
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 1.6e-76 289.7 188 79.3
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 4.0e-75 285.0 189 77.8
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 5.2e-75 284.6 189 77.8
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 5.2e-75 284.6 188 78.2
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 2.6e-74 282.3 189 77.8
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 3.4e-74 282.0 188 77.7
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 7.6e-74 280.8 189 77.8
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 9.9e-74 280.4 188 76.1
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 1.3e-73 280.0 193 75.6
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 2.2e-73 279.3 188 75.0
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 3.7e-73 278.5 188 78.2
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 3.7e-73 278.5 188 78.2
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 4.9e-73 278.1 189 76.7
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 4.9e-73 278.1 189 76.7
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 6.4e-73 277.7 188 74.5
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 8.3e-73 277.3 188 72.9
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 1.1e-72 276.9 193 71.0
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.1e-72 276.9 189 76.2
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 1.4e-72 276.6 188 75.5
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 1.4e-72 276.6 208 69.7
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 1.4e-72 276.6 188 75.5
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 1.9e-72 276.2 189 77.2
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 2.4e-72 275.8 188 74.5
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 4.1e-72 275.0 188 75.5
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 5.4e-72 274.6 189 75.1
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 9.2e-72 273.9 188 73.4
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.2e-71 273.5 188 73.4
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 2.1e-71 272.7 188 69.7
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 2.1e-71 272.7 188 73.4
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 2.7e-71 272.3 189 75.1
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 2.7e-71 272.3 188 74.5
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 3.5e-71 271.9 188 73.9
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 3.5e-71 271.9 188 72.9
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 3.5e-71 271.9 188 74.5
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 4.6e-71 271.6 192 72.9
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 6.0e-71 271.2 188 74.5
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 1.0e-70 270.4 188 72.3
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 1.0e-70 270.4 194 71.1
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 1.0e-70 270.4 188 72.3
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 1.3e-70 270.0 194 72.2
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 1.7e-70 269.6 188 73.4
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 1.7e-70 269.6 188 73.9
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 1.7e-70 269.6 195 71.8
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 2.3e-70 269.2 188 69.7
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 5.1e-70 268.1 188 71.3
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 5.1e-70 268.1 188 73.9
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 6.6e-70 267.7 188 73.4
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 1.1e-69 266.9 188 71.3
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 1.1e-69 266.9 188 73.4
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 1.9e-69 266.2 228 62.7
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 3.3e-69 265.4 189 72.0
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 3.3e-69 265.4 188 73.4
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 4.3e-69 265.0 189 73.5
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 4.3e-69 265.0 194 71.1
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 4.3e-69 265.0 191 73.3
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 7.3e-69 264.2 189 71.4
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 7.3e-69 264.2 189 71.4
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 7.3e-69 264.2 194 70.1
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 9.6e-69 263.8 189 71.4
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 9.6e-69 263.8 189 71.4
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 9.6e-69 263.8 189 70.4
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 9.6e-69 263.8 194 69.1
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 1.2e-68 263.5 204 68.1
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 1.6e-68 263.1 231 60.6
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 1.6e-68 263.1 194 68.0
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 2.1e-68 262.7 189 73.0
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 3.6e-68 261.9 161 81.4
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 6.2e-68 261.2 194 69.1
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.1e-68 260.8 182 74.2
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 8.1e-68 260.8 223 62.8
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 4.0e-67 258.5 225 62.7
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 5.8e-66 254.6 188 70.2
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 7.6e-66 254.2 187 69.5
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 7.6e-66 254.2 187 69.5
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 9.9e-66 253.8 189 68.3
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 1.7e-65 253.1 162 78.4
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.2e-65 252.7 156 82.1
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 2.2e-65 252.7 188 68.6
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.1e-64 250.4 182 73.1
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 9.3e-64 247.3 159 79.2
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.2e-63 246.9 263 54.4
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.6e-63 246.5 156 79.5
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 1.6e-63 246.5 156 80.8
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 6.6e-62 241.1 170 72.9
MSTRG.2877 Avicennia marina HOM05D003515 ORTHO05D004347 1.9e-61 239.6 159 77.4
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 1.9e-61 239.6 156 79.5
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 4.8e-60 235.0 202 63.9
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 7.6e-58 227.6 190 61.1
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 2.4e-56 222.6 156 75.0
Cpa.g.sc30.112 Carica papaya HOM05D003515 ORTHO05D004347 3.2e-56 222.2 143 78.3
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 5.1e-54 214.9 174 69.0
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 7.3e-53 211.1 188 57.4
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 4.8e-52 208.4 152 70.4
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 1.8e-51 206.5 196 57.7
CSS0006685 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 7.6e-50 201.1 121 86.0
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 2.2e-49 199.5 188 54.8
CSS0015745 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.9e-46 188.7 122 77.9
SHI28054 Sapria himalayana HOM05D003515 ORTHO05D004347 5.6e-45 184.9 127 74.8
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 2.8e-44 182.6 152 66.4
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 9.0e-43 177.6 177 53.7
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 1.5e-42 176.8 121 73.6
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 2.0e-42 176.4 178 53.4
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 3.1e-35 152.5 121 62.0
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 4.1e-35 152.1 121 62.0
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 4.1e-35 152.1 121 62.0
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 1.2e-34 150.6 122 61.5
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 1.2e-34 150.6 122 61.5
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 1.2e-34 150.6 122 61.5
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 1.2e-34 150.6 122 61.5
Zm00001eb031780 Zea mays HOM05D003515 ORTHO05D004347 3.4e-34 149.1 121 61.2
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 3.4e-34 149.1 122 60.7
CSS0033549 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 5.8e-34 148.3 110 72.7
CDE06G0434 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 7.6e-34 147.9 188 48.4
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 2.2e-33 146.4 122 60.7
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 1.8e-30 136.7 155 49.0
CSS0007738 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.3e-29 132.5 94 77.7
CDE06G2844 Ceratophyllum demersum HOM05D003515 ORTHO05D004363 3.1e-27 125.9 88 72.7
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 4.5e-26 122.1 74 79.7
Zm00001eb371460 Zea mays HOM05D003515 ORTHO05D004347 2.1e-23 113.2 78 71.8
Psat7g087520 Pisum sativum HOM05D003515 ORTHO05D004347 1.0e-22 110.9 130 51.5
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 3.0e-22 109.4 167 42.5
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.8e-14 83.6 146 37.0
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 1.7e-12 77.0 114 44.7
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 4.8e-12 75.5 135 36.3
PRCOL_00005783 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 4.1e-11 72.4 154 35.1
SEGI_20533 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 4.5e-10 68.9 165 30.9
MCO16G582 Micromonas commoda HOM05D003515 ORTHO05D004347 5.9e-10 68.6 147 33.3
Cre07.g338602 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 1.3e-09 67.4 190 28.4
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 5.0e-09 65.5 57 61.4
Mapoly0044s0119 Marchantia polymorpha HOM05D003515 ORTHO05D004347 6.5e-09 65.1 126 33.3
CBR_g20120 Chara braunii HOM05D003515 ORTHO05D004347 8.5e-09 64.7 119 31.1
Cre12.g550800 Chlamydomonas reinhardtii HOM05D004852 ORTHO05D006128 5.5e-08 62.0 118 36.4
Cfa025287 Carpinus fangiana HOM05D003515 ORTHO05D004347 7.2e-08 61.6 125 31.2
SMO235G0070 Selaginella moellendorffii HOM05D004852 ORTHO05D006128 1.2e-07 60.8 116 37.1
Cre03.g148050 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 3.6e-07 59.3 117 34.2
SHI28053 Sapria himalayana HOM05D003515 ORTHO05D365381 1.8e-06 57.0 26 92.3
SMO367G0229 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 3.0e-06 56.2 145 27.6
SEGI_39660 Sequoiadendron giganteum HOM05D004852 ORTHO05D006128 4.0e-06 55.8 120 33.3
MCO11G654 Micromonas commoda HOM05D004852 ORTHO05D006128 6.7e-06 55.1 158 27.8


User provided reference genes

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