Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 3.9e-179 631.3 316 100.0
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.4e-144 516.5 313 80.5
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 6.6e-126 454.5 311 70.7
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 3.3e-125 452.2 285 78.6
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 3.4e-122 442.2 311 69.5
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.7e-121 438.7 310 68.4
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.1e-120 435.3 310 67.7
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 9.2e-120 434.1 311 69.5
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.6e-119 433.3 312 71.5
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 2.0e-119 433.0 309 68.9
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 3.9e-118 428.7 308 68.8
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.9e-117 426.4 308 67.5
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.5e-117 426.0 308 67.2
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 3.3e-117 425.6 308 68.5
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 7.3e-117 424.5 312 66.0
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.6e-116 423.3 319 66.5
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.8e-116 422.5 311 65.0
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 3.6e-116 422.2 311 66.6
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.0e-115 420.6 310 65.5
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.8e-115 419.9 314 65.0
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.1e-115 419.1 314 66.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 3.1e-115 419.1 333 63.7
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 6.8e-115 417.9 311 65.9
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 8.9e-115 417.5 311 65.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 1.5e-114 416.8 310 65.2
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 3.4e-114 415.6 313 63.3
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.3e-113 413.7 315 65.4
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.3e-113 413.7 313 64.2
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.7e-113 413.3 312 64.1
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.9e-113 411.8 314 65.3
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 4.9e-113 411.8 308 64.0
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 8.3e-113 411.0 317 64.0
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 4.1e-112 408.7 311 64.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 7.0e-112 407.9 361 56.8
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 7.0e-112 407.9 314 63.7
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 9.2e-112 407.5 311 63.3
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 9.2e-112 407.5 303 66.7
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 9.2e-112 407.5 314 65.3
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.6e-111 406.8 313 64.2
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.7e-111 406.0 314 64.6
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 4.6e-111 405.2 314 62.7
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.5e-109 400.2 314 63.7
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 3.3e-109 399.1 313 62.9
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 6.2e-108 394.8 314 63.1
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.1e-107 394.0 280 69.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 2.3e-107 392.9 302 64.9
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.5e-106 390.2 313 60.4
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.6e-106 389.4 310 61.6
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.4e-106 388.7 310 61.9
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.3e-105 387.1 310 62.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.7e-105 386.7 316 61.7
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.7e-105 386.7 311 62.1
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 2.2e-105 386.3 311 63.7
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 4.9e-105 385.2 281 66.5
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.1e-104 384.0 308 63.0
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.4e-104 383.6 308 63.0
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 2.4e-104 382.9 311 59.5
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.2e-104 382.5 325 59.4
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 7.1e-104 381.3 311 59.5
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.2e-103 380.6 316 60.8
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.2e-103 380.6 308 62.7
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.2e-103 380.6 281 65.5
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.2e-103 380.6 281 63.0
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.1e-103 379.8 307 61.6
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 3.5e-103 379.0 307 59.6
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 7.8e-103 377.9 311 62.4
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 7.8e-103 377.9 311 62.4
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.3e-102 377.1 311 59.2
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.7e-102 376.7 311 61.1
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 3.0e-102 375.9 313 61.7
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.0e-102 375.9 311 59.5
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 8.6e-102 374.4 321 58.6
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.5e-101 373.6 268 67.9
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 2.5e-101 372.9 292 63.0
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 4.3e-101 372.1 281 64.4
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 1.8e-99 366.7 325 58.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 2.3e-99 366.3 313 59.7
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 3.4e-98 362.5 327 56.9
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 4.4e-98 362.1 313 58.5
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 5.8e-98 361.7 311 59.5
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.7e-97 360.1 310 58.4
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.2e-97 359.8 276 63.8
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 3.7e-97 359.0 275 62.2
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 4.9e-97 358.6 332 55.4
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 2.1e-95 353.2 276 64.9
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 3.0e-94 349.4 279 62.0
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 6.6e-94 348.2 311 58.5
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.1e-93 347.4 307 57.0
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 4.3e-93 345.5 307 57.0
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 4.3e-93 345.5 240 70.8
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.2e-92 344.0 307 57.7
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.2e-92 344.0 307 57.0
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.1e-92 343.2 307 56.7
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.6e-92 342.4 307 56.7
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.6e-92 342.4 307 56.7
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 3.6e-92 342.4 307 56.7
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.6e-92 342.4 307 56.7
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.1e-91 340.9 307 57.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.1e-91 340.9 307 56.4
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.8e-91 340.1 307 55.7
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 3.1e-91 339.3 307 56.0
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 4.0e-91 339.0 309 55.7
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 4.0e-91 339.0 307 56.4
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 2.0e-90 336.7 307 56.0
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 9.9e-90 334.3 233 71.2
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 2.2e-89 333.2 307 55.7
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.2e-89 333.2 313 55.0
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 9.3e-88 327.8 314 54.1
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.1e-87 326.6 260 61.2
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 3.5e-87 325.9 281 58.0
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.3e-86 323.9 240 67.1
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 3.0e-86 322.8 310 54.2
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 6.6e-86 321.6 268 58.6
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.5e-85 320.5 293 54.9
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 2.5e-85 319.7 246 63.8
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.6e-79 298.9 253 59.7
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 2.3e-78 296.6 222 67.1
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 4.9e-73 278.9 276 50.0
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 3.2e-72 276.2 274 50.7
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.8e-70 270.4 316 48.4
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 7.4e-69 265.0 287 44.9
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 2.9e-65 253.1 199 61.3
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.2e-48 196.4 190 52.1
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.5e-45 187.6 193 56.0
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.7e-44 184.1 169 55.0
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 4.5e-42 176.0 137 62.0
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.8e-38 164.1 112 68.8
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 3.9e-38 162.9 282 36.9
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 8.8e-30 135.2 114 58.8
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.0e-22 111.7 113 49.6
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 3.7e-12 76.6 260 29.6
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.1e-11 73.2 138 36.2


User provided reference genes

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