Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 0.0e+00 1428.7 749 100.0
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 0.0e+00 1357.0 753 94.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 0.0e+00 1107.4 734 79.3
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 8.4e-273 943.7 768 67.1
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.8e-270 936.0 650 75.7
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 5.1e-262 907.9 767 64.9
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.4e-258 895.2 762 64.7
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 4.8e-252 874.8 806 60.7
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.8e-243 846.3 764 59.8
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 2.6e-242 842.4 737 62.7
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.9e-240 836.3 772 59.1
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 2.1e-239 832.8 770 59.7
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.8e-238 829.7 762 59.1
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 3.0e-238 828.9 765 58.6
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 4.0e-238 828.6 763 59.8
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 3.3e-237 825.5 766 59.8
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 4.4e-237 825.1 772 59.2
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.7e-236 823.2 761 60.1
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 2.8e-236 822.4 762 59.3
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 4.8e-236 821.6 760 59.5
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 2.4e-235 819.3 754 59.8
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.2e-234 817.0 758 60.6
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.0e-234 816.2 776 59.3
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 2.7e-234 815.8 761 59.4
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.5e-234 815.1 767 59.3
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 5.9e-234 814.7 764 59.6
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 3.8e-233 812.0 762 58.4
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 5.0e-233 811.6 760 57.1
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 8.5e-233 810.8 778 58.1
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 3.2e-232 808.9 755 58.8
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 3.6e-231 805.4 763 59.9
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 6.1e-231 804.7 762 57.9
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.0e-230 803.9 765 58.6
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.4e-230 803.5 765 58.7
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.4e-230 803.5 762 57.1
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.5e-229 800.0 756 58.3
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 2.0e-229 799.7 750 58.5
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.6e-229 799.3 755 58.5
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 7.5e-229 797.7 764 57.7
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 2.4e-227 792.7 755 58.1
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 3.1e-227 792.3 768 56.4
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.1e-227 792.0 772 56.9
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 9.1e-227 790.8 762 57.6
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.1e-227 790.8 754 57.6
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 6.6e-225 784.6 767 56.6
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.9e-224 783.1 775 55.4
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 4.2e-224 781.9 764 55.5
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 4.2e-224 781.9 783 55.8
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.2e-224 781.2 767 56.6
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 9.5e-224 780.8 764 55.4
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 2.1e-223 779.6 764 55.6
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 5.2e-222 775.0 762 55.5
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 6.8e-222 774.6 763 56.4
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 2.6e-221 772.7 768 56.9
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 5.7e-221 771.5 760 55.7
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 3.7e-220 768.8 761 55.3
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.1e-219 767.3 764 54.7
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.4e-219 766.9 764 54.8
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 2.4e-219 766.1 754 54.4
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 5.4e-219 765.0 761 55.2
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.6e-218 763.5 786 53.9
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 3.5e-218 762.3 775 55.9
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 8.6e-217 757.7 787 53.2
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.9e-216 756.5 774 56.1
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.5e-216 756.1 765 55.6
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.2e-215 753.8 735 57.4
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.6e-215 753.4 735 61.0
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 4.7e-215 751.9 717 58.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 8.0e-215 751.1 779 53.3
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 8.0e-215 751.1 760 55.9
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.4e-214 750.4 766 55.0
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.0e-213 746.5 779 53.0
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.3e-212 743.8 767 53.6
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 3.7e-212 742.3 770 53.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 4.1e-211 738.8 711 58.1
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 7.0e-211 738.0 792 54.8
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 4.3e-208 728.8 807 52.3
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 4.3e-208 728.8 762 53.0
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 4.7e-207 725.3 717 56.3
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 2.0e-197 693.3 750 53.3
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.3e-196 690.6 755 55.5
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.7e-196 690.3 577 63.3
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.2e-196 689.9 730 53.4
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 7.1e-195 684.9 713 53.7
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.1e-194 683.3 755 51.4
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.7e-193 680.2 759 51.5
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.6e-191 672.5 763 50.7
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.8e-190 670.2 759 50.5
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.4e-187 659.8 575 61.6
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 3.5e-186 656.0 735 50.5
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.3e-185 654.1 574 62.0
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 6.6e-185 651.7 564 62.1
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 3.3e-184 649.4 572 61.5
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 8.4e-180 634.8 517 67.7
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 8.4e-180 634.8 571 60.1
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.4e-179 634.0 570 60.5
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 3.0e-177 626.3 762 49.6
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 3.9e-177 625.9 655 53.1
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 6.2e-175 618.6 571 59.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.0e-173 613.6 458 70.7
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 1.4e-171 607.4 529 62.4
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 9.3e-171 604.7 524 63.5
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 2.7e-170 603.2 744 49.6
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.8e-169 600.5 759 49.1
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.2e-162 577.8 581 56.5
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 2.4e-158 563.5 757 45.8
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 6.5e-148 528.9 776 40.2
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 7.2e-147 525.4 618 47.4
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.0e-144 517.3 520 53.8
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.8e-126 457.6 506 51.4
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.2e-115 420.2 434 51.8
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.8e-110 404.4 341 61.6
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.2e-106 391.7 287 71.1
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.8e-106 390.6 812 31.9
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.6e-101 374.8 384 54.7
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-99 368.6 325 60.9
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 5.6e-99 366.3 480 47.9
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.3e-92 344.4 284 63.7
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.9e-91 341.3 479 47.6
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 6.8e-89 332.8 284 61.6
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 4.9e-87 326.6 540 41.9
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 9.2e-86 322.4 754 30.1
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 5.1e-84 316.6 736 28.7
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 2.6e-72 277.7 225 66.7
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.9e-70 271.6 229 63.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 9.9e-64 249.2 347 41.8
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.3e-63 248.8 176 71.6
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 4.6e-61 240.4 205 61.0
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 7.4e-51 206.5 631 26.5
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.7e-47 195.3 205 53.2
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-43 182.6 420 34.3
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-43 182.2 421 34.7
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 8.4e-39 166.4 140 60.0
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 5.9e-32 143.7 191 46.1
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 7.2e-30 136.7 242 39.3
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.1e-27 129.4 191 42.4
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 4.3e-27 127.5 108 62.0
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 8.2e-26 123.2 291 35.4
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 9.7e-19 99.8 95 57.9
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.7e-18 97.8 241 33.6
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 6.3e-18 97.1 85 58.8
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.2e-16 92.8 290 25.9
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 1.0e-15 89.7 85 57.6
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.8e-15 87.8 70 62.9
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-12 79.3 62 62.9
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.5e-11 75.9 117 39.3
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 4.8e-10 70.9 84 38.1
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 5.9e-08 63.9 72 45.8
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 2.9e-07 61.6 182 23.6
MCO12G150 Micromonas commoda HOM05D004734 ORTHO05D006019 9.4e-06 56.6 326 24.5


User provided reference genes

Program Settings