Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0438211 Helianthus annuus HOM05D004395 ORTHO05D005234 6.4e-33 143.3 63 100.0
HanXRQChr06g0167821 Helianthus annuus HOM05D004395 ORTHO05D005234 7.6e-26 119.8 60 88.3
ECA236G4761 Erigeron canadensis HOM05D004395 ORTHO05D005234 1.7e-25 118.6 60 86.7
Lsat_1_v5_gn_8_166540 Lactuca sativa HOM05D004395 ORTHO05D005234 1.7e-25 118.6 60 86.7
DCAR_002879 Daucus carota HOM05D004395 ORTHO05D005234 1.0e-22 109.4 60 78.3
QL01p046128 Quercus lobata HOM05D004395 ORTHO05D005234 1.8e-22 108.6 60 81.7
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 2.3e-22 108.2 60 78.3
Cfa005822 Carpinus fangiana HOM05D004395 ORTHO05D005234 2.3e-22 108.2 60 78.3
Lj2A1204T57 Lonicera japonica HOM05D004395 ORTHO05D005234 2.3e-22 108.2 60 80.0
Hund09618 Selenicereus undatus HOM05D004395 ORTHO05D005234 2.3e-22 108.2 60 78.3
Actinidia25840 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.0e-22 107.8 60 76.7
arahy.Tifrunner.gnm1.ann1.NCI439 Arachis hypogaea HOM05D004395 ORTHO05D005234 3.9e-22 107.5 60 78.3
arahy.Tifrunner.gnm1.ann1.TUT6I7 Arachis hypogaea HOM05D004395 ORTHO05D005234 3.9e-22 107.5 60 78.3
Peaxi162Scf00001g10221 Petunia axillaris HOM05D004395 ORTHO05D005234 3.9e-22 107.5 60 78.3
Dinv10080 Davidia involucrata HOM05D004395 ORTHO05D005234 5.1e-22 107.1 60 78.3
CAN.G362.41 Capsicum annuum HOM05D004395 ORTHO05D005234 6.7e-22 106.7 60 78.3
AUR62011832 Chenopodium quinoa HOM05D004395 ORTHO05D005234 6.7e-22 106.7 60 76.7
AUR62024674 Chenopodium quinoa HOM05D004395 ORTHO05D005234 6.7e-22 106.7 60 76.7
Oeu004074.1 Olea europaea HOM05D004395 ORTHO05D005234 6.7e-22 106.7 60 75.0
Potri.002G197800 Populus trichocarpa HOM05D004395 ORTHO05D005234 6.7e-22 106.7 60 75.0
Dinv33105 Davidia involucrata HOM05D004395 ORTHO05D005234 8.7e-22 106.3 60 78.3
Nitab4.5_0000906g0030 Nicotiana tabacum HOM05D004395 ORTHO05D005234 8.7e-22 106.3 60 76.7
Nitab4.5_0001301g0120 Nicotiana tabacum HOM05D004395 ORTHO05D005234 8.7e-22 106.3 60 76.7
A09p54450 Brassica napus HOM05D004395 ORTHO05D005234 1.1e-21 105.9 60 76.7
BraA09t40858Z Brassica rapa HOM05D004395 ORTHO05D005234 1.1e-21 105.9 60 76.7
CANSAT25G2014 Cannabis sativa HOM05D004395 ORTHO05D005234 1.1e-21 105.9 60 76.7
THA.LOC104800347 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 1.1e-21 105.9 60 76.7
THA.LOC104827672 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 1.1e-21 105.9 60 76.7
Aqoxy2G02790 Aquilegia oxysepala HOM05D004395 ORTHO05D005234 1.5e-21 105.5 60 75.0
Cpa.g.sc18.22 Carica papaya HOM05D004395 ORTHO05D005234 1.5e-21 105.5 55 80.0
Eucgr.K03534 Eucalyptus grandis HOM05D004395 ORTHO05D005234 1.5e-21 105.5 60 76.7
Glyma.10G014200 Glycine max HOM05D004395 ORTHO05D005234 1.5e-21 105.5 60 76.7
Oeu047386.1 Olea europaea HOM05D004395 ORTHO05D005234 1.5e-21 105.5 60 75.0
Solyc01g079590.3 Solanum lycopersicum HOM05D004395 ORTHO05D005234 1.5e-21 105.5 60 76.7
Sopen01g031370 Solanum pennellii HOM05D004395 ORTHO05D005234 1.5e-21 105.5 60 76.7
PGSC0003DMG400009034 Solanum tuberosum HOM05D004395 ORTHO05D005234 1.5e-21 105.5 60 76.7
VMungo0720G1854 Vigna mungo HOM05D004395 ORTHO05D005234 1.5e-21 105.5 60 76.7
Carub.0005s2924 Capsella rubella HOM05D004395 ORTHO05D005234 1.9e-21 105.1 60 76.7
SalBow3G3242 Salvia bowleyana HOM05D004395 ORTHO05D005234 1.9e-21 105.1 60 75.0
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 1.9e-21 105.1 60 75.0
Atru.chr5.1037 Acer truncatum HOM05D004395 ORTHO05D005234 2.5e-21 104.8 55 81.8
CiPaw.07G115900 Carya illinoinensis HOM05D004395 ORTHO05D005234 2.5e-21 104.8 60 76.7
Migut.D00093 Erythranthe guttata HOM05D004395 ORTHO05D005234 2.5e-21 104.8 60 75.0
Rhsim01G0289900 Rhododendron simsii HOM05D004395 ORTHO05D005234 2.5e-21 104.8 54 81.5
Ah.02g112150 Amaranthus hybridus HOM05D004395 ORTHO05D005234 3.3e-21 104.4 60 75.0
AL5G45330 Arabidopsis lyrata HOM05D004395 ORTHO05D005234 3.3e-21 104.4 60 75.0
BcaC07g40733 Brassica carinata HOM05D004395 ORTHO05D005234 3.3e-21 104.4 60 75.0
COL.COLO4_23252 Corchorus olitorius HOM05D004395 ORTHO05D005234 3.3e-21 104.4 55 78.2
Duzib138G1253 Durio zibethinus HOM05D004395 ORTHO05D005234 3.3e-21 104.4 60 73.3
Prupe.8G270400 Prunus persica HOM05D004395 ORTHO05D005234 3.3e-21 104.4 55 83.6
Thecc.01G311200 Theobroma cacao HOM05D004395 ORTHO05D005234 3.3e-21 104.4 55 78.2
GSVIVG01028100001 Vitis vinifera HOM05D004395 ORTHO05D005234 3.3e-21 104.4 60 76.7
BcaC07g42768 Brassica carinata HOM05D004395 ORTHO05D005234 4.3e-21 104.0 60 75.0
Oeu009086.1 Olea europaea HOM05D004395 ORTHO05D005234 4.3e-21 104.0 60 73.3
THA.LOC104817465 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 4.3e-21 104.0 60 75.0
AT3G62580 Arabidopsis thaliana HOM05D004395 ORTHO05D005234 5.7e-21 103.6 60 73.3
C08p37340 Brassica napus HOM05D004395 ORTHO05D005234 5.7e-21 103.6 60 75.0
BolC8t51312H Brassica oleracea HOM05D004395 ORTHO05D005234 5.7e-21 103.6 60 75.0
Dinv33106 Davidia involucrata HOM05D004395 ORTHO05D005234 5.7e-21 103.6 60 73.3
Thhalv10006236m.g Eutrema salsugineum HOM05D004395 ORTHO05D005234 5.7e-21 103.6 60 75.0
Phvul.007G215400 Phaseolus vulgaris HOM05D004395 ORTHO05D005234 5.7e-21 103.6 60 75.0
Sabra02G0159800 Salix brachista HOM05D004395 ORTHO05D005234 5.7e-21 103.6 60 75.0
Sp5g00920 Schrenkiella parvula HOM05D004395 ORTHO05D005234 5.7e-21 103.6 60 75.0
ClCG09G005210 Citrullus lanatus HOM05D004395 ORTHO05D005234 7.4e-21 103.2 60 75.0
Gohir.A11G110300 Gossypium hirsutum HOM05D004395 ORTHO05D005234 7.4e-21 103.2 60 73.3
Gohir.D11G115400 Gossypium hirsutum HOM05D004395 ORTHO05D005234 7.4e-21 103.2 60 73.3
Gorai.007G123500 Gossypium raimondii HOM05D004395 ORTHO05D005234 7.4e-21 103.2 60 73.3
Manes.01G226500 Manihot esculenta HOM05D004395 ORTHO05D005234 7.4e-21 103.2 55 78.2
Sed0020172 Sechium edule HOM05D004395 ORTHO05D005234 7.4e-21 103.2 60 75.0
CARHR172840 Cardamine hirsuta HOM05D004395 ORTHO05D005234 9.6e-21 102.8 60 75.0
Lalb_Chr02g0146721 Lupinus albus HOM05D004395 ORTHO05D005234 9.6e-21 102.8 60 71.7
TAR633G1754 Trochodendron aralioides HOM05D004395 ORTHO05D005234 9.6e-21 102.8 60 73.3
TAR633G1975 Trochodendron aralioides HOM05D004395 ORTHO05D005234 9.6e-21 102.8 60 73.3
MSTRG.21675 Avicennia marina HOM05D004395 ORTHO05D005234 1.3e-20 102.4 60 73.3
Lalb_Chr21g0309501 Lupinus albus HOM05D004395 ORTHO05D005234 1.3e-20 102.4 60 73.3
PGR044G2039 Punica granatum HOM05D004395 ORTHO05D005234 1.3e-20 102.4 60 73.3
TAR365G0011 Trochodendron aralioides HOM05D004395 ORTHO05D005234 1.3e-20 102.4 60 75.0
Ciclev10022218m.g Citrus clementina HOM05D004395 ORTHO05D005234 1.6e-20 102.1 60 71.7
Gohir.A08G119000 Gossypium hirsutum HOM05D004395 ORTHO05D005234 1.6e-20 102.1 60 73.3
Gorai.004G143800 Gossypium raimondii HOM05D004395 ORTHO05D005234 1.6e-20 102.1 60 73.3
Oeu008460.1 Olea europaea HOM05D004395 ORTHO05D005234 1.6e-20 102.1 60 71.7
Aa31LG10G16400 Aethionema arabicum HOM05D004395 ORTHO05D005234 2.1e-20 101.7 60 73.3
Ca_10293_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 2.1e-20 101.7 55 80.0
Ca_30262_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 2.1e-20 101.7 55 80.0
FvH4_5g39460 Fragaria vesca HOM05D004395 ORTHO05D005234 2.1e-20 101.7 55 78.2
FAN04G0288 Fragaria x ananassa HOM05D004395 ORTHO05D005234 2.1e-20 101.7 55 78.2
FAN08G2141 Fragaria x ananassa HOM05D004395 ORTHO05D005234 2.1e-20 101.7 55 78.2
FAN18G1082 Fragaria x ananassa HOM05D004395 ORTHO05D005234 2.1e-20 101.7 55 78.2
unitig_0.g274 Utricularia gibba HOM05D004395 ORTHO05D005234 2.1e-20 101.7 60 73.3
unitig_60.g25658 Utricularia gibba HOM05D004395 ORTHO05D005234 2.1e-20 101.7 60 71.7
CSS0011400 Camellia sinensis var. sinensis HOM05D004395 ORTHO05D005234 2.8e-20 101.3 60 73.3
CSS0015284 Camellia sinensis var. sinensis HOM05D004395 ORTHO05D005234 2.8e-20 101.3 60 73.3
vmacro15119 Vaccinium macrocarpon HOM05D004395 ORTHO05D005234 2.8e-20 101.3 60 71.7
MELO3C015935.2 Cucumis melo HOM05D004395 ORTHO05D005234 4.8e-20 100.5 60 73.3
CsaV3_7G029860 Cucumis sativus L. HOM05D004395 ORTHO05D005234 4.8e-20 100.5 60 73.3
Eucgr.K03533 Eucalyptus grandis HOM05D004395 ORTHO05D005234 4.8e-20 100.5 58 74.1
MD03G1296800 Malus domestica HOM05D004395 ORTHO05D005234 4.8e-20 100.5 60 75.0
RcHm_v2.0_Chr7g0241771 Rosa chinensis HOM05D004395 ORTHO05D005234 4.8e-20 100.5 55 76.4
TPR.G19763 Trifolium pratense HOM05D004395 ORTHO05D005234 4.8e-20 100.5 55 80.0
MD11G1316400 Malus domestica HOM05D004395 ORTHO05D005234 6.3e-20 100.1 60 75.0
Nn3g21647 Nelumbo nucifera HOM05D004395 ORTHO05D005234 6.3e-20 100.1 60 70.0
TWI18G0814 Tripterygium wilfordii HOM05D004395 ORTHO05D005234 6.3e-20 100.1 60 71.7
TWI75G0438 Tripterygium wilfordii HOM05D004395 ORTHO05D005234 6.3e-20 100.1 60 73.3
Psat6g162440 Pisum sativum HOM05D004395 ORTHO05D005234 8.2e-20 99.8 55 78.2
Sc17g0000530 Simmondsia chinensis HOM05D004395 ORTHO05D005234 8.2e-20 99.8 60 75.0
FAN13G1316 Fragaria x ananassa HOM05D004395 ORTHO05D005234 1.1e-19 99.4 55 76.4
Manes.05G002300 Manihot esculenta HOM05D004395 ORTHO05D005234 1.1e-19 99.4 55 76.4
Medtr1g087320 Medicago truncatula HOM05D004395 ORTHO05D005234 1.8e-19 98.6 55 76.4
RcHm_v2.0_Chr5g0039051 Rosa chinensis HOM05D004395 ORTHO05D005234 3.1e-19 97.8 60 71.7
Cc01_g21280 Coffea canephora HOM05D004395 ORTHO05D005234 4.1e-19 97.4 60 70.0
Os12g0557400 Oryza sativa ssp. japonica HOM05D004395 ORTHO05D005234 1.2e-18 95.9 55 72.7
PSO761G0048 Papaver somniferum HOM05D004395 ORTHO05D005234 1.5e-18 95.5 55 72.7
Lj5g0013155 Lotus japonicus HOM05D004395 ORTHO05D005234 2.6e-18 94.7 60 68.3
MBI18_g28456_MAGBIO Magnolia biondii HOM05D004395 ORTHO05D005234 3.4e-18 94.4 60 68.3
RcHm_v2.0_Chr3g0460601 Rosa chinensis HOM05D004395 ORTHO05D005234 3.4e-18 94.4 53 75.5
Eucgr.K03536 Eucalyptus grandis HOM05D004395 ORTHO05D005234 4.5e-18 94.0 60 68.3
Os11g0673100 Oryza sativa ssp. japonica HOM05D004395 ORTHO05D005234 1.3e-17 92.4 55 67.3
Zm00001eb137060 Zea mays HOM05D004395 ORTHO05D005234 2.2e-17 91.7 55 67.3
ATR0706G165 Amborella trichopoda HOM05D004395 ORTHO05D005234 3.8e-17 90.9 60 66.7
MD04G1089900 Malus domestica HOM05D004395 ORTHO05D005234 5.0e-17 90.5 60 68.3
PSO210G6304 Papaver somniferum HOM05D004395 ORTHO05D005234 5.0e-17 90.5 55 69.1
Zm00001eb028370 Zea mays HOM05D004395 ORTHO05D005234 5.0e-17 90.5 55 67.3
Cfa005821 Carpinus fangiana HOM05D004395 ORTHO05D005234 6.5e-17 90.1 60 65.0
Haze_05020 Corylus avellana HOM05D004395 ORTHO05D005234 6.5e-17 90.1 60 65.0
Haze_05023 Corylus avellana HOM05D004395 ORTHO05D005234 6.5e-17 90.1 60 65.0
Sc17g0000520 Simmondsia chinensis HOM05D004395 ORTHO05D005234 8.5e-17 89.7 57 68.4
Haze_05024 Corylus avellana HOM05D004395 ORTHO05D005234 1.4e-16 89.0 54 68.5
CDE02G0047 Ceratophyllum demersum HOM05D004395 ORTHO05D005234 1.9e-16 88.6 60 61.7
CDE09G1198 Ceratophyllum demersum HOM05D004395 ORTHO05D005234 1.9e-16 88.6 60 61.7
HPP92_017241 Vanilla planifolia HOM05D004395 ORTHO05D005234 2.5e-16 88.2 55 67.3
Sc05g0000520 Simmondsia chinensis HOM05D004395 ORTHO05D005234 5.5e-16 87.0 61 62.3
SEGI_05878 Sequoiadendron giganteum HOM05D004395 ORTHO05D005234 3.6e-15 84.3 54 66.7
MD17G1137100 Malus domestica HOM05D004395 ORTHO05D005234 1.3e-14 82.4 55 67.3
SMO367G0059 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 1.3e-12 75.9 54 55.6
Pp3c20_10750 Physcomitrium patens HOM05D004395 ORTHO05D005234 6.3e-12 73.6 57 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4364 Anthoceros agrestis HOM05D004395 ORTHO05D005234 3.8e-09 64.3 57 49.1
RcHm_v2.0_Chr7g0189431 Rosa chinensis HOM05D004395 ORTHO05D005234 3.8e-09 64.3 41 68.3
Mapoly0073s0092 Marchantia polymorpha HOM05D004395 ORTHO05D005234 5.0e-09 63.9 57 54.4
HPP92_027567 Vanilla planifolia HOM05D004395 ORTHO05D005234 2.1e-07 58.5 39 59.0
MBI18_g28451_MAGBIO Magnolia biondii HOM05D004395 ORTHO05D005234 7.9e-07 56.6 53 43.4
RcHm_v2.0_Chr6g0294301 Rosa chinensis HOM05D004395 ORTHO05D005234 1.4e-06 55.8 32 65.6
CBR_g50787 Chara braunii HOM05D004395 ORTHO05D005234 1.8e-06 55.5 58 44.8


User provided reference genes

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