Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 9.3e-122 440.3 230 100.0
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.9e-103 379.4 230 85.2
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.5e-100 369.8 220 85.9
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.7e-91 339.7 230 74.8
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 74.8
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 3.2e-90 335.5 230 74.3
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.6e-89 333.2 230 73.0
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 2.7e-89 332.4 230 73.9
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 5.2e-88 328.2 230 70.0
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 8.8e-88 327.4 230 70.9
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 8.8e-88 327.4 230 72.2
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.1e-87 327.0 230 73.9
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.5e-87 326.6 230 70.9
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 2.0e-87 326.2 230 71.7
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.0e-87 326.2 230 72.2
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 2.0e-87 326.2 230 70.4
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 5.7e-87 324.7 230 69.6
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 9.7e-87 323.9 230 72.2
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.3e-86 323.6 230 70.9
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.7e-86 323.2 230 71.3
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 3.7e-86 322.0 230 69.1
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 72.6
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.1e-85 320.5 230 70.4
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 1.4e-85 320.1 230 72.2
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 2.4e-85 319.3 230 70.9
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 3.1e-85 318.9 239 69.0
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 4.1e-85 318.5 230 70.9
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 9.1e-85 317.4 230 69.6
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.2e-84 317.0 230 70.4
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.6e-84 316.6 230 70.0
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 2.0e-84 316.2 230 70.9
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.6e-84 315.8 254 66.5
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 4.5e-84 315.1 230 69.1
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 5.9e-84 314.7 230 70.4
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 5.9e-84 314.7 230 68.7
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.7e-84 314.3 230 70.0
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.0e-83 313.9 230 69.6
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.3e-83 313.5 230 70.9
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.3e-83 313.5 229 71.2
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 2.9e-83 312.4 230 70.0
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.5e-83 311.2 230 70.9
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 6.5e-83 311.2 232 70.7
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 8.5e-83 310.8 230 69.6
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.1e-82 310.5 230 70.9
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.5e-82 310.1 230 70.4
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.9e-82 309.7 230 70.0
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 1.9e-82 309.7 230 69.1
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.5e-82 309.3 230 68.7
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 5.5e-82 308.1 230 68.7
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 7.2e-82 307.8 230 67.4
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.2e-82 307.8 230 68.3
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 9.4e-82 307.4 230 67.4
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 1.2e-81 307.0 232 68.5
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.6e-81 306.6 230 66.5
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 1.6e-81 306.6 230 66.1
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 67.0
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 8.0e-81 304.3 230 67.4
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 8.0e-81 304.3 230 67.0
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 1.0e-80 303.9 230 67.0
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.4e-80 303.5 230 65.2
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 5.2e-80 301.6 230 66.5
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 6.7e-80 301.2 230 64.8
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 8.8e-80 300.8 230 67.8
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 8.8e-80 300.8 250 64.8
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.5e-79 300.1 230 65.7
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 3.3e-79 298.9 220 69.5
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 3.3e-79 298.9 230 66.1
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 4.4e-79 298.5 232 67.2
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 7.5e-79 297.7 232 66.8
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 9.7e-79 297.4 230 65.7
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.3e-78 297.0 252 63.1
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 2.2e-78 296.2 230 65.2
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 2.2e-78 296.2 230 65.7
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.8e-77 293.1 263 60.5
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 1.2e-76 290.4 230 67.8
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 1.2e-76 290.4 231 67.1
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.0e-76 289.7 234 66.7
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 5.9e-76 288.1 230 66.1
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 2.9e-75 285.8 232 65.5
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.9e-75 285.8 230 64.3
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 8.5e-75 284.3 231 63.2
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.1e-74 283.9 230 64.8
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.5e-74 283.5 230 66.1
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.9e-74 283.1 231 64.5
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 5.5e-74 281.6 230 62.2
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 8.0e-73 277.7 230 61.3
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.0e-72 277.3 230 61.3
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.0e-72 277.3 230 61.3
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 3.0e-72 275.8 230 60.0
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 3.0e-72 275.8 230 60.9
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 4.0e-72 275.4 318 52.5
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 5.2e-72 275.0 230 60.4
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 1.2e-71 273.9 230 60.0
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.2e-71 273.9 230 59.6
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.6e-71 272.7 230 60.4
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.6e-71 272.7 230 60.4
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 9.8e-71 270.8 230 60.0
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 1.3e-70 270.4 307 52.4
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 4.8e-70 268.5 236 61.4
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.1e-69 267.3 230 59.1
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.4e-69 266.9 230 58.7
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 5.9e-68 261.5 230 58.3
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 7.7e-68 261.2 212 62.7
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.7e-67 260.0 220 62.3
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 2.3e-67 259.6 230 57.0
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 5.5e-66 255.0 361 44.9
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.3e-64 249.6 199 63.3
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.8e-64 248.1 230 60.0
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.0e-60 236.5 180 68.9
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.7e-59 233.4 230 51.7
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.8e-56 223.4 179 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 2.3e-56 223.0 231 53.7
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 6.8e-56 221.5 166 66.3
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.3e-54 217.2 231 52.4
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 3.7e-54 215.7 164 65.9
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.4e-53 211.8 164 64.6
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 3.5e-52 209.1 138 76.1
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 1.0e-51 207.6 229 52.4
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.0e-51 206.1 164 64.0
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.5e-50 203.0 141 69.5
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.8e-48 196.8 234 47.0
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 3.1e-48 196.1 283 42.8
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 5.2e-48 195.3 150 64.7
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 9.2e-45 184.5 138 64.5
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 9.2e-45 184.5 245 46.1
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 3.0e-43 179.5 245 46.1
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 3.3e-42 176.0 117 75.2
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 2.3e-40 169.9 176 52.8
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 8.9e-40 167.9 111 76.6
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 3.4e-39 166.0 139 61.2
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 3.7e-38 162.5 148 56.1
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 1.9e-37 160.2 266 38.7
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.5e-34 149.8 217 43.3
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 5.6e-34 148.7 139 52.5
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.7e-33 145.6 137 53.3
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 1.2e-28 131.0 293 34.1
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.8e-25 119.8 90 64.4
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 8.1e-25 118.2 126 51.6
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.1e-24 117.9 115 55.7
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.1e-21 107.8 97 56.7
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 6.0e-20 102.1 71 64.8
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 7.8e-20 101.7 69 71.0
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.6e-17 94.0 63 68.3
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.6e-17 94.0 53 84.9
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.4e-16 90.9 125 48.0
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 2.6e-15 86.7 70 60.0
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.4e-15 86.3 54 81.5
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 4.5e-15 85.9 77 63.6
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.1e-13 81.3 125 41.6
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.9e-13 80.5 68 58.8
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 3.5e-12 76.3 129 37.2
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.8e-11 73.9 83 48.2
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 6.9e-08 62.0 69 47.8
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 1.5e-07 60.8 92 38.0
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 6.4e-06 55.5 41 63.4


User provided reference genes

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