Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.5e-80 302.8 148 100.0
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.8e-73 279.3 139 97.8
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 2.0e-72 275.8 139 95.7
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 1.4e-70 269.6 135 97.8
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 7.4e-64 247.3 139 84.9
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 1.6e-61 239.6 139 80.6
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 2.8e-55 218.8 141 72.3
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 4.8e-55 218.0 139 72.7
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 6.3e-55 217.6 128 78.1
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 1.8e-54 216.1 139 71.2
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.8e-54 216.1 139 69.1
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 2.4e-54 215.7 139 71.9
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 2.4e-54 215.7 131 75.6
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 3.1e-54 215.3 130 76.2
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 4.1e-54 214.9 130 75.4
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 7.0e-54 214.2 139 72.7
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 7.0e-54 214.2 132 74.2
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.6e-53 213.0 143 68.5
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 2.0e-53 212.6 130 75.4
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 4.5e-53 211.5 130 76.2
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 7.7e-53 210.7 132 74.2
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 1.3e-52 209.9 139 68.3
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.7e-52 209.5 139 66.9
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 1.7e-52 209.5 126 77.0
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 1.7e-52 209.5 130 74.6
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 2.2e-52 209.1 130 73.8
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 2.2e-52 209.1 130 72.3
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 2.2e-52 209.1 140 70.0
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.9e-52 208.8 130 73.1
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.9e-52 208.8 130 73.1
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 2.9e-52 208.8 142 72.5
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 3.8e-52 208.4 132 72.7
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 3.8e-52 208.4 139 71.2
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 5.0e-52 208.0 128 74.2
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 5.0e-52 208.0 132 72.7
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 6.5e-52 207.6 130 73.8
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 6.5e-52 207.6 130 73.8
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 8.5e-52 207.2 133 72.2
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 8.5e-52 207.2 130 70.8
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.1e-51 206.8 139 69.1
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 1.5e-51 206.5 139 69.1
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 1.5e-51 206.5 140 70.0
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 1.5e-51 206.5 128 75.0
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 2.5e-51 205.7 126 73.8
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 3.2e-51 205.3 128 74.2
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 3.2e-51 205.3 130 71.5
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 3.2e-51 205.3 130 72.3
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 4.2e-51 204.9 128 75.0
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 4.2e-51 204.9 132 68.9
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 4.2e-51 204.9 128 73.4
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 5.5e-51 204.5 139 67.6
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 7.2e-51 204.1 128 73.4
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 9.4e-51 203.8 132 68.2
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 9.4e-51 203.8 132 68.9
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 1.2e-50 203.4 139 69.1
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 1.2e-50 203.4 119 76.5
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 1.6e-50 203.0 130 71.5
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 2.1e-50 202.6 126 73.8
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 2.1e-50 202.6 130 70.8
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 2.1e-50 202.6 128 71.1
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 2.7e-50 202.2 132 67.4
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 2.7e-50 202.2 132 71.2
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.6e-50 201.8 139 64.7
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 3.6e-50 201.8 128 70.3
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 4.7e-50 201.4 130 72.3
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.7e-50 201.4 130 71.5
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 4.7e-50 201.4 132 68.2
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 6.1e-50 201.1 139 67.6
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 6.1e-50 201.1 130 71.5
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 8.0e-50 200.7 128 68.8
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 8.0e-50 200.7 139 66.9
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.4e-49 199.9 126 71.4
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 1.4e-49 199.9 132 69.7
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 1.8e-49 199.5 130 67.7
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.8e-49 199.5 128 71.9
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.3e-49 199.1 139 64.7
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 3.0e-49 198.7 132 66.7
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.0e-49 198.7 130 70.0
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 3.0e-49 198.7 128 71.1
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 4.0e-49 198.4 128 71.9
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.8e-49 197.6 132 67.4
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 6.8e-49 197.6 126 69.8
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 8.8e-49 197.2 128 68.0
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 8.8e-49 197.2 139 64.0
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 8.8e-49 197.2 128 72.7
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 1.2e-48 196.8 139 65.5
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.5e-48 196.4 139 65.5
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 1.5e-48 196.4 128 68.0
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.0e-48 196.1 132 66.7
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 2.6e-48 195.7 130 68.5
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.4e-48 195.3 130 67.7
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 4.4e-48 194.9 128 67.2
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 7.5e-48 194.1 128 67.2
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 7.5e-48 194.1 128 67.2
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 7.5e-48 194.1 128 68.8
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.3e-47 193.4 139 62.6
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.3e-47 193.4 130 70.0
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.3e-47 193.4 130 70.0
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.7e-47 193.0 130 70.0
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.7e-47 193.0 134 64.2
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.7e-47 193.0 134 64.2
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 2.2e-47 192.6 168 57.1
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.8e-47 192.2 130 69.2
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.7e-47 191.8 130 65.4
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 4.8e-47 191.4 128 66.4
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 4.8e-47 191.4 139 61.9
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 8.3e-47 190.7 128 64.8
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.1e-46 190.3 126 69.8
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 1.4e-46 189.9 130 69.2
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.6e-45 186.4 132 65.2
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 5.9e-45 184.5 117 70.1
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 7.7e-45 184.1 177 53.7
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 3.8e-44 181.8 136 61.0
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 5.5e-43 177.9 134 61.2
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 3.4e-40 168.7 129 58.1
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.7e-39 166.4 124 62.1
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.8e-39 165.6 107 72.0
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 8.3e-39 164.1 139 59.7
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.1e-38 162.2 139 52.5
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 7.0e-38 161.0 139 51.8
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 2.3e-36 156.0 131 55.0
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 7.3e-35 151.0 133 51.9
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 1.8e-33 146.4 84 79.8
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.5e-32 143.3 84 76.2
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 1.5e-32 143.3 84 76.2
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.0e-32 142.9 118 53.4
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.4e-32 142.1 128 46.9
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 3.2e-30 135.6 139 50.4
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.0e-28 130.6 97 67.0
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 8.6e-28 127.5 132 47.0
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 5.6e-27 124.8 79 70.9
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 2.8e-26 122.5 79 69.6
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.3e-25 119.4 79 65.8
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 4.4e-24 115.2 132 45.5
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 4.1e-22 108.6 64 73.4
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 6.6e-20 101.3 124 39.5
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 9.5e-19 97.4 79 54.4
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 9.5e-19 97.4 82 57.3
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 2.3e-17 92.8 138 38.4
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.3e-15 87.0 60 65.0
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 2.4e-14 82.8 51 70.6
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.1e-11 73.9 45 71.1


User provided reference genes

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