Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.1e-136 490.0 251 100.0
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 6.2e-103 377.9 245 79.2
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 7.9e-90 334.3 239 74.9
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.5e-80 303.5 247 66.0
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.4e-78 296.2 236 67.8
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.0e-77 293.1 235 69.8
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 9.3e-75 284.3 243 61.7
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.1e-74 283.1 249 65.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 4.6e-74 282.0 247 62.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.3e-72 275.8 249 61.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.7e-72 275.0 233 60.9
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 5.7e-72 275.0 208 67.8
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.3e-71 273.9 206 68.9
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.3e-71 273.9 208 67.3
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 3.7e-71 272.3 233 60.5
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 4.8e-71 271.9 235 61.3
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.4e-70 270.4 241 61.4
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.4e-70 270.4 239 61.1
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.8e-70 270.0 240 59.6
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.4e-70 269.6 198 70.7
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 3.1e-70 269.2 247 61.5
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 4.1e-70 268.9 232 60.8
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 4.1e-70 268.9 199 70.4
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 4.1e-70 268.9 250 59.2
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.2e-69 267.3 233 63.5
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 3.4e-69 265.8 237 62.4
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 3.4e-69 265.8 241 61.4
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 5.8e-69 265.0 198 69.2
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.8e-69 265.0 274 55.8
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.0e-68 264.2 244 58.6
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.9e-68 262.7 220 63.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 3.8e-68 262.3 236 59.7
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 5.0e-68 261.9 232 59.1
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.1e-67 260.8 238 60.9
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.4e-67 260.4 233 62.2
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.5e-67 259.6 240 59.2
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 5.5e-67 258.5 239 58.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.2e-66 257.3 240 58.3
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.6e-66 256.9 233 59.7
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.1e-66 256.5 240 58.8
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.1e-66 256.5 240 58.8
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.1e-66 256.5 241 56.8
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 3.5e-66 255.8 235 61.7
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 6.1e-66 255.0 241 57.3
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 6.1e-66 255.0 201 65.7
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.0e-65 254.2 239 57.7
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.8e-65 253.4 240 59.2
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.8e-65 253.4 236 58.5
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.3e-65 253.1 235 59.1
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.9e-65 252.3 219 61.2
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 3.9e-65 252.3 235 57.4
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 5.1e-65 251.9 237 57.8
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 5.1e-65 251.9 238 58.4
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 6.7e-65 251.5 217 61.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.7e-65 251.1 241 57.3
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.5e-64 250.4 241 57.3
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-64 250.4 241 57.3
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.5e-64 249.6 236 58.1
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.5e-64 249.6 239 57.7
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 4.3e-64 248.8 240 59.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 4.3e-64 248.8 238 58.4
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 4.3e-64 248.8 233 60.1
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.7e-64 248.4 236 58.1
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.3e-63 247.3 244 56.1
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.6e-63 246.9 241 57.3
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.2e-63 246.5 238 60.1
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 2.2e-63 246.5 241 57.7
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 6.3e-63 245.0 225 60.0
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 6.3e-63 245.0 242 55.4
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 8.2e-63 244.6 240 57.5
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-62 243.8 244 56.1
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.4e-62 243.8 234 59.4
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.4e-62 243.8 241 55.6
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.8e-62 243.4 225 60.0
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.8e-62 243.4 244 56.1
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.8e-62 243.4 240 57.5
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 3.1e-62 242.7 242 56.2
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 4.1e-62 242.3 238 58.8
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 5.3e-62 241.9 200 62.5
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 5.3e-62 241.9 220 61.4
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.2e-61 240.7 255 54.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.2e-61 240.7 255 54.5
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 2.0e-61 240.0 242 56.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 3.4e-61 239.2 236 57.2
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 3.4e-61 239.2 204 63.2
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 7.7e-61 238.0 193 66.3
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.3e-60 237.3 177 70.6
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 3.8e-60 235.7 240 56.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 5.0e-60 235.3 200 64.0
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 8.5e-60 234.6 202 63.9
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 8.5e-60 234.6 193 63.2
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.5e-59 233.0 205 61.5
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 5.5e-59 231.9 260 53.8
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 7.2e-59 231.5 223 56.5
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.7e-58 229.6 189 63.0
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.6e-58 229.2 247 57.1
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 3.6e-58 229.2 198 60.6
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.5e-56 223.8 188 62.2
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.3e-56 222.2 226 55.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 7.4e-56 221.5 201 61.2
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.7e-56 221.1 226 54.9
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.7e-55 220.3 237 52.7
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.2e-55 219.9 216 60.2
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 6.3e-55 218.4 224 54.0
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 8.2e-55 218.0 216 59.7
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.8e-54 216.9 188 61.2
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.1e-54 216.1 203 62.1
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 4.1e-54 215.7 234 56.4
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 9.1e-54 214.5 244 50.4
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.2e-53 214.2 201 58.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 2.9e-52 209.5 212 53.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.1e-51 207.6 212 53.3
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.4e-51 207.2 244 54.1
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.4e-51 207.2 244 54.1
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 3.2e-51 206.1 227 54.2
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 5.5e-51 205.3 162 66.7
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 9.4e-51 204.5 244 53.3
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.1e-50 203.4 200 54.0
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.6e-50 202.6 162 65.4
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 4.7e-50 202.2 218 53.7
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.8e-49 200.3 227 50.2
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.3e-49 199.9 258 48.8
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.9e-49 199.1 162 66.0
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 6.7e-49 198.4 162 64.2
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.1e-48 197.6 162 63.0
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.1e-48 197.6 162 63.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 3.3e-48 196.1 233 48.9
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 5.7e-48 195.3 162 62.3
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.7e-47 193.7 210 54.3
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.8e-46 190.3 196 55.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.0e-44 184.5 150 64.7
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 3.6e-42 176.0 174 53.4
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.0e-41 172.9 194 52.6
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 9.7e-40 167.9 190 48.4
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.4e-38 164.1 201 48.3
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 3.1e-38 162.9 208 47.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 7.0e-38 161.8 128 68.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-37 161.0 195 50.8
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.3e-36 157.5 204 46.6
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.9e-36 156.4 204 43.6
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 3.8e-36 156.0 172 52.3
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 2.7e-34 149.8 99 77.8
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.8e-33 147.1 196 45.9
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.4e-32 142.5 218 43.1
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.7e-31 139.4 115 66.1
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.4e-30 136.7 182 47.8
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.5e-29 132.5 96 74.0
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 3.8e-28 129.4 102 63.7
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.4e-24 116.3 198 39.4
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 1.3e-23 114.4 92 60.9
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.8e-20 102.8 93 52.7
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.3e-12 77.0 143 42.7
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 8.6e-12 75.1 88 45.5
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.1e-11 74.7 98 46.9
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 3.1e-09 66.6 52 59.6
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 8.9e-09 65.1 67 49.3
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.4e-06 57.8 63 52.4
MCO11G868 Micromonas commoda HOM05D004453 ORTHO05D005375 4.1e-06 56.2 181 26.5


User provided reference genes

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