Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0435481 Helianthus annuus HOM05D016049 ORTHO05D012019 4.6e-47 192.2 93 100.0
HanXRQChr08g0216891 Helianthus annuus HOM05D016049 ORTHO05D012019 6.0e-15 85.5 74 62.2
HanXRQChr14g0435501 Helianthus annuus HOM05D016049 ORTHO05D012019 3.9e-14 82.8 45 86.7
HanXRQChr04g0104281 Helianthus annuus HOM05D016049 ORTHO05D019812 4.1e-11 72.8 94 42.6
FAN11G0422 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-10 70.9 60 46.7
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 1.3e-09 67.8 94 37.2
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 5.0e-09 65.9 92 35.9
SGA_v2.0_scaffold225G43016 Striga asiatica HOM05D000162 ORTHO05D000090 5.0e-09 65.9 98 34.7
FAN11G2213 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.5e-09 65.5 95 40.0
HanXRQChr13g0420271 Helianthus annuus HOM05D016049 ORTHO05D003288 1.4e-08 64.3 94 36.2
ECA234G1654 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.5e-08 63.5 45 64.4
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 2.5e-08 63.5 114 33.3
Manes.13G004200 Manihot esculenta HOM05D000162 ORTHO05D000090 2.5e-08 63.5 104 33.7
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 2.5e-08 63.5 85 36.5
FAN21G2679 Fragaria x ananassa HOM05D009519 ORTHO05D010307 3.2e-08 63.2 102 34.3
SalBow1G4634 Salvia bowleyana HOM05D042251 ORTHO05D002854 1.2e-07 61.2 93 37.6
Hma1.2p1_1276F.1_g272070 Hydrangea macrophylla HOM05D016049 ORTHO05D012019 1.6e-07 60.8 120 31.7
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 2.1e-07 60.5 92 34.8
ECA232G4999 Erigeron canadensis HOM05D000162 ORTHO05D000090 3.6e-07 59.7 39 64.1
CSS0032657 Camellia sinensis var. sinensis HOM05D000162 ORTHO05D000090 4.6e-07 59.3 82 37.8
FAN16G1933 Fragaria x ananassa HOM05D000027 ORTHO05D001163 4.6e-07 59.3 146 26.0
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 7.9e-07 58.5 92 31.5
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 7.9e-07 58.5 88 31.8
Actinidia36709 Actinidia chinensis HOM05D019995 ORTHO05D012019 1.0e-06 58.2 47 55.3
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 1.0e-06 58.2 86 34.9
BcaC04g22583 Brassica carinata HOM05D000162 ORTHO05D024264 1.0e-06 58.2 99 29.3
CAN.G1081.5 Capsicum annuum HOM05D000058 ORTHO05D000255 1.0e-06 58.2 104 32.7
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.0e-06 58.2 105 30.5
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 1.4e-06 57.8 89 31.5
AUR62000844 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.4e-06 57.8 116 26.7
Gorai.009G384000 Gossypium raimondii HOM05D000162 ORTHO05D000090 1.4e-06 57.8 92 30.4
PGSC0003DMG400015467 Solanum tuberosum HOM05D000891 ORTHO05D000761 1.8e-06 57.4 105 31.4
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 3.0e-06 56.6 88 30.7
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 3.0e-06 56.6 93 36.6
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 3.0e-06 56.6 107 29.9
Glyma.18G128532 Glycine max HOM05D007063 ORTHO05D008822 3.0e-06 56.6 103 32.0
Lsat_1_v5_gn_3_115200 Lactuca sativa HOM05D000162 ORTHO05D000090 3.0e-06 56.6 92 32.6
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 3.0e-06 56.6 91 33.0
Hund21891 Selenicereus undatus HOM05D008994 ORTHO05D010954 3.0e-06 56.6 127 26.0
C04p29550 Brassica napus HOM05D027743 ORTHO05D011376 3.9e-06 56.2 93 32.3
Dinv10015 Davidia involucrata HOM05D010002 ORTHO05D012862 3.9e-06 56.2 39 61.5
Dinv40197 Davidia involucrata HOM05D006556 ORTHO05D008146 3.9e-06 56.2 89 34.8
Actinidia14742 Actinidia chinensis HOM05D008483 ORTHO05D018225 5.1e-06 55.8 89 31.5
CAN.G53.43 Capsicum annuum HOM05D000891 ORTHO05D000761 5.1e-06 55.8 105 29.5
CsaV3_4G005170 Cucumis sativus L. HOM05D000891 ORTHO05D000761 5.1e-06 55.8 107 29.0
PSO017G1195 Papaver somniferum HOM05D008994 ORTHO05D010954 5.1e-06 55.8 87 35.6
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 5.1e-06 55.8 109 28.4
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 6.7e-06 55.5 106 30.2
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.7e-06 55.5 92 32.6
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 6.7e-06 55.5 91 33.0
Peaxi162Scf00515g00029 Petunia axillaris HOM05D000891 ORTHO05D000761 6.7e-06 55.5 107 30.8
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.8e-06 55.1 92 32.6
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 8.8e-06 55.1 85 35.3
HanXRQChr14g0440391 Helianthus annuus HOM05D000891 ORTHO05D000761 8.8e-06 55.1 104 28.8
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 8.8e-06 55.1 104 29.8


User provided reference genes

Program Settings