Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0434751 Helianthus annuus HOM05D003440 ORTHO05D003953 2.1e-52 208.8 106 100.0
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 1.4e-27 126.3 79 73.4
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 2.2e-25 119.0 115 63.5
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 5.4e-24 114.4 103 51.5
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 7.0e-24 114.0 103 51.5
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 9.2e-24 113.6 79 64.6
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 3.5e-23 111.7 83 57.8
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 3.5e-23 111.7 110 50.9
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 6.0e-23 110.9 81 60.5
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 7.8e-23 110.5 84 60.7
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 7.8e-23 110.5 106 51.9
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 1.0e-22 110.2 81 60.5
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 1.0e-22 110.2 112 49.1
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 2.3e-22 109.0 79 60.8
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 3.0e-22 108.6 83 57.8
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 3.9e-22 108.2 81 59.3
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 3.9e-22 108.2 99 55.6
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 8.6e-22 107.1 84 57.1
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 1.1e-21 106.7 83 57.8
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.1e-21 106.7 84 57.1
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 1.5e-21 106.3 82 62.2
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 1.5e-21 106.3 79 62.0
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 1.5e-21 106.3 79 60.8
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.5e-21 106.3 79 59.5
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 2.5e-21 105.5 107 50.5
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 3.3e-21 105.1 86 65.1
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 3.3e-21 105.1 79 59.5
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 4.3e-21 104.8 79 62.0
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 5.6e-21 104.4 82 59.8
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 5.6e-21 104.4 104 51.9
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 9.5e-21 103.6 79 60.8
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 9.5e-21 103.6 81 58.0
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 9.5e-21 103.6 82 58.5
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 1.2e-20 103.2 79 59.5
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 1.2e-20 103.2 79 59.5
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 1.2e-20 103.2 81 58.0
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 1.6e-20 102.8 79 55.7
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 1.6e-20 102.8 104 51.0
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 1.6e-20 102.8 104 51.0
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.6e-20 102.8 79 57.0
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 2.1e-20 102.4 78 61.5
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 2.1e-20 102.4 83 57.8
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 2.8e-20 102.1 104 51.0
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 3.6e-20 101.7 104 48.1
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 4.7e-20 101.3 79 59.5
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 4.7e-20 101.3 104 51.0
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 4.7e-20 101.3 104 50.0
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 4.7e-20 101.3 79 59.5
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 4.7e-20 101.3 79 58.2
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 4.7e-20 101.3 82 58.5
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.2e-20 100.9 81 59.3
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.2e-20 100.9 81 59.3
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 6.2e-20 100.9 102 50.0
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 6.2e-20 100.9 108 46.3
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 6.2e-20 100.9 97 50.5
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 8.1e-20 100.5 109 46.8
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.1e-19 100.1 81 58.0
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 1.4e-19 99.8 116 45.7
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 2.3e-19 99.0 85 55.3
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 3.1e-19 98.6 97 49.5
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 3.1e-19 98.6 91 53.8
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 4.0e-19 98.2 82 56.1
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 4.0e-19 98.2 81 56.8
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 4.0e-19 98.2 85 54.1
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 5.2e-19 97.8 79 58.2
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 5.2e-19 97.8 110 46.4
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 6.8e-19 97.4 111 45.0
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 6.8e-19 97.4 81 55.6
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 8.9e-19 97.1 110 50.0
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 8.9e-19 97.1 82 57.3
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 8.9e-19 97.1 111 45.9
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 8.9e-19 97.1 108 45.4
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 8.9e-19 97.1 121 45.5
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.2e-18 96.7 82 57.3
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.5e-18 96.3 79 58.2
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.5e-18 96.3 121 45.5
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 2.0e-18 95.9 105 45.7
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 2.0e-18 95.9 91 52.7
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 2.0e-18 95.9 81 58.0
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 2.0e-18 95.9 77 58.4
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 2.0e-18 95.9 103 49.5
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 2.6e-18 95.5 67 62.7
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.6e-18 95.5 79 55.7
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.6e-18 95.5 97 49.5
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 2.6e-18 95.5 79 55.7
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.6e-18 95.5 63 65.1
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 4.4e-18 94.7 92 51.1
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 4.4e-18 94.7 91 51.6
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 4.4e-18 94.7 92 51.1
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 4.4e-18 94.7 82 53.7
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 4.4e-18 94.7 77 58.4
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.4e-18 94.7 79 55.7
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 4.4e-18 94.7 76 53.9
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 4.4e-18 94.7 82 57.3
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 5.8e-18 94.4 91 51.6
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 5.8e-18 94.4 91 51.6
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 5.8e-18 94.4 91 51.6
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 5.8e-18 94.4 79 53.2
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 7.5e-18 94.0 79 59.5
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 9.8e-18 93.6 91 51.6
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 9.8e-18 93.6 110 47.3
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 9.8e-18 93.6 92 51.1
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 9.8e-18 93.6 92 51.1
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 9.8e-18 93.6 67 61.2
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 9.8e-18 93.6 62 64.5
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.3e-17 93.2 82 54.9
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.7e-17 92.8 82 54.9
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 2.2e-17 92.4 59 67.8
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 2.9e-17 92.0 59 64.4
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 3.7e-17 91.7 82 53.7
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 6.4e-17 90.9 86 54.7
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 8.3e-17 90.5 119 50.4
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 3.2e-16 88.6 108 41.7
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 5.4e-16 87.8 93 40.9
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 5.4e-16 87.8 60 65.0
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 1.2e-15 86.7 82 50.0
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 7.8e-15 84.0 80 47.5
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 5.1e-14 81.3 59 57.6
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 6.6e-14 80.9 59 55.9
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 1.5e-13 79.7 51 64.7
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 6.2e-12 74.3 80 47.5
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 4.0e-11 71.6 103 39.8
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 5.2e-11 71.2 74 43.2
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 5.2e-11 71.2 75 38.7
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 6.8e-11 70.9 109 34.9
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 1.2e-10 70.1 59 50.8
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.0e-10 69.3 59 49.2
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 2.6e-10 68.9 108 33.3
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 3.4e-10 68.6 59 45.8
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.4e-10 68.6 59 45.8
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.4e-10 68.6 59 45.8
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 3.4e-10 68.6 59 45.8
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 4.4e-10 68.2 62 43.5
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 5.8e-10 67.8 59 47.5
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 5.8e-10 67.8 59 44.1
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 7.6e-10 67.4 62 41.9
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 7.6e-10 67.4 82 39.0
Pp3c6_18540 Physcomitrium patens HOM05D003440 ORTHO05D003953 9.9e-10 67.0 59 49.2
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 9.9e-10 67.0 108 32.4
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 1.7e-09 66.2 53 49.1
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 1.7e-09 66.2 53 49.1
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 2.9e-09 65.5 60 41.7
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 2.9e-09 65.5 59 44.1
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 2.9e-09 65.5 62 43.5
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 3.8e-09 65.1 121 32.2
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 4.9e-09 64.7 62 51.6
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 4.9e-09 64.7 59 45.8
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 6.4e-09 64.3 68 39.7
Pp3c5_6640 Physcomitrium patens HOM05D003440 ORTHO05D003953 6.4e-09 64.3 58 48.3
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 6.4e-09 64.3 59 42.4
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 8.4e-09 63.9 59 57.6
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.1e-08 63.5 59 44.1
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.1e-08 63.5 59 42.4
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.4e-08 63.2 59 40.7
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.4e-08 63.2 59 40.7
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.4e-08 63.2 59 40.7
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.4e-08 63.2 59 40.7
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.4e-08 63.2 59 40.7
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 2.4e-08 62.4 98 31.6
Pp3c7_16400 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.4e-08 62.4 73 39.7
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 3.2e-08 62.0 59 40.7
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 5.4e-08 61.2 59 40.7
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 5.4e-08 61.2 59 40.7
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 9.2e-08 60.5 59 39.0
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 9.2e-08 60.5 59 39.0
Pp3c3_1170 Physcomitrium patens HOM05D003440 ORTHO05D003953 9.2e-08 60.5 62 43.5
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 9.2e-08 60.5 59 40.7
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 1.2e-07 60.1 57 40.4
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 2.7e-07 58.9 59 40.7
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 4.6e-07 58.2 107 32.7
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 7.8e-07 57.4 59 42.4
Prupe.1G131400 Prunus persica HOM05D003440 ORTHO05D003953 1.0e-06 57.0 57 49.1
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 1.3e-06 56.6 59 35.6
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.3e-06 56.6 53 41.5
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.3e-06 56.6 53 41.5
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 6.6e-06 54.3 53 39.6


User provided reference genes

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