Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 3.0e-150 535.4 283 100.0
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 1.2e-122 443.7 300 83.0
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.2e-111 407.1 252 86.9
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.7e-105 386.7 289 75.8
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 1.5e-93 347.1 321 64.8
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.5e-93 347.1 305 66.9
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 2.6e-93 346.3 336 63.7
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.8e-92 342.4 324 63.9
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 3.8e-92 342.4 251 75.3
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 6.4e-92 341.7 329 62.3
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 8.4e-92 341.3 325 63.7
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.4e-91 339.7 323 63.5
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.2e-91 339.3 329 61.1
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 4.2e-91 339.0 328 62.8
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 5.4e-91 338.6 336 60.7
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.4e-91 338.6 336 60.7
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 7.1e-91 338.2 315 63.5
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 7.1e-91 338.2 279 71.0
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 9.3e-91 337.8 323 61.6
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.2e-90 337.4 325 62.5
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.2e-90 337.4 339 60.2
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.2e-90 337.4 246 76.0
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.6e-90 337.0 326 62.0
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.6e-90 337.0 326 62.0
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.6e-90 337.0 320 62.2
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 2.1e-90 336.7 317 61.8
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.1e-90 336.7 335 60.9
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 2.7e-90 336.3 324 62.7
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 3.5e-90 335.9 318 61.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 3.5e-90 335.9 324 62.7
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 7.8e-90 334.7 323 62.5
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 7.8e-90 334.7 329 61.1
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 7.8e-90 334.7 325 60.6
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 7.8e-90 334.7 325 60.6
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.0e-89 334.3 317 61.5
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.0e-89 334.3 324 61.1
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.3e-89 334.0 307 63.8
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 2.3e-89 333.2 251 72.9
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 3.0e-89 332.8 328 60.1
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 3.9e-89 332.4 320 62.2
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.1e-89 332.0 321 62.3
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 6.6e-89 331.6 322 60.9
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.1e-88 330.9 333 60.7
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.5e-88 329.7 317 62.8
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 5.6e-88 328.6 312 62.8
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 5.6e-88 328.6 322 63.7
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.6e-88 328.6 325 62.5
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 7.3e-88 328.2 325 60.9
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 9.6e-88 327.8 320 60.9
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 9.6e-88 327.8 315 61.9
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 2.8e-87 326.2 323 59.8
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 3.6e-87 325.9 329 59.9
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 3.6e-87 325.9 311 61.4
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 6.2e-87 325.1 325 60.9
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 8.1e-87 324.7 315 62.5
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 2.4e-86 323.2 325 60.6
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 3.1e-86 322.8 318 60.4
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 6.9e-86 321.6 322 60.9
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 2.0e-85 320.1 338 57.1
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 2.6e-85 319.7 323 59.8
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 7.6e-85 318.2 256 69.1
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 9.9e-85 317.8 249 73.5
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 9.9e-85 317.8 336 58.3
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 3.8e-84 315.8 232 76.3
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.8e-84 315.8 249 72.3
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 3.8e-84 315.8 315 60.6
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 4.9e-84 315.5 343 57.1
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 4.9e-84 315.5 343 57.1
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 6.4e-84 315.1 327 59.3
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.4e-83 313.9 323 59.1
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 2.4e-83 313.2 335 57.6
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 7.1e-83 311.6 319 61.1
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.2e-82 310.8 243 72.0
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.1e-82 310.1 330 57.9
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.7e-82 309.7 317 59.9
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 4.6e-82 308.9 321 58.9
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 4.6e-82 308.9 328 57.9
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.0e-81 306.2 301 60.5
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 5.6e-80 302.0 228 73.2
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.3e-79 300.8 295 58.6
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.8e-79 299.7 317 55.8
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 3.6e-79 299.3 317 57.7
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 4.8e-79 298.9 320 58.1
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.8e-79 298.9 349 55.3
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 2.4e-78 296.6 320 58.1
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 5.3e-78 295.4 341 56.0
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 2.6e-77 293.1 247 67.6
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 4.9e-76 288.9 332 53.6
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.1e-75 287.7 316 57.3
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 9.3e-75 284.6 268 61.2
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.2e-74 284.3 288 60.4
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 3.5e-74 282.7 302 58.9
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 8.7e-73 278.1 318 55.0
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.1e-72 277.7 345 51.0
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.9e-72 276.9 305 56.1
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.1e-70 271.2 208 74.0
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 6.9e-70 268.5 210 73.3
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.0e-68 264.6 310 53.2
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.2e-68 263.5 296 54.7
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 2.9e-68 263.1 217 70.0
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.4e-67 260.8 304 53.0
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 7.9e-66 255.0 402 45.5
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 1.0e-65 254.6 297 53.9
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 3.0e-65 253.1 228 67.5
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 5.7e-64 248.8 224 67.0
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 5.7e-64 248.8 328 49.7
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.3e-63 247.7 283 53.7
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.6e-63 247.3 287 54.4
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 2.8e-63 246.5 219 68.5
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.1e-62 243.0 255 57.3
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.2e-61 241.1 331 48.6
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 2.0e-61 240.4 303 52.8
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 2.0e-61 240.4 303 52.8
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 5.8e-61 238.8 331 49.2
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.2e-60 236.9 321 49.5
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 8.4e-60 235.0 213 70.0
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 9.3e-59 231.5 248 58.5
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 9.3e-59 231.5 248 58.5
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 9.3e-59 231.5 248 58.5
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.0e-57 226.5 325 49.5
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 1.5e-56 224.2 335 49.0
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 3.3e-56 223.0 241 58.1
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 4.8e-55 219.2 182 70.9
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 6.3e-55 218.8 207 66.7
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.5e-48 197.6 265 47.5
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.4e-46 190.3 217 52.1
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.7e-39 167.5 135 65.9
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 7.7e-37 158.7 136 69.9
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.6e-34 151.0 102 76.5
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 6.7e-33 145.6 221 47.1
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 4.2e-27 126.3 190 40.5
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.7e-26 122.9 199 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.0e-25 121.7 148 45.3
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 6.8e-25 119.0 158 39.9
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.7e-20 104.4 121 44.6
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 2.9e-20 103.6 154 37.7
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.2e-19 100.1 126 43.7
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 5.5e-19 99.4 130 40.0
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 7.2e-19 99.0 96 57.3
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 1.8e-17 94.4 117 49.6
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 2.6e-16 90.5 118 55.9
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 7.5e-16 89.0 94 63.8
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 4.9e-15 86.3 120 45.8
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 6.3e-15 85.9 112 46.4
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.0e-12 78.6 126 42.9
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 2.3e-12 77.4 144 38.2
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 5.0e-12 76.3 49 67.3
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 6.8e-09 65.9 39 79.5
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 5.7e-08 62.8 95 40.0


User provided reference genes

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