Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1896.3 959 100.0
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1454.9 991 78.0
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1406.3 937 75.7
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1398.6 1005 74.4
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1120.5 937 63.6
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1109.7 942 63.7
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1100.1 942 61.9
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1096.6 932 61.5
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1094.3 934 61.3
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1088.9 939 61.7
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1088.6 939 61.7
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1088.2 932 62.3
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1084.3 943 61.2
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1082.8 946 61.8
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1082.4 940 61.7
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1082.0 960 61.7
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1080.9 917 61.6
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1080.9 927 61.4
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1080.5 938 61.1
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 1.7e-310 1069.3 929 60.7
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 3.8e-310 1068.1 949 60.9
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 5.0e-310 1067.8 955 60.2
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 2.5e-309 1065.4 930 61.0
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 2.1e-308 1062.4 947 59.8
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 3.9e-307 1058.1 951 60.3
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 5.1e-307 1057.7 951 59.4
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 7.4e-306 1053.9 1000 58.1
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 1.7e-305 1052.7 1001 57.7
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 2.2e-305 1052.4 934 59.4
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.2e-305 1052.4 949 59.6
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 4.8e-305 1051.2 955 59.6
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 8.2e-305 1050.4 954 58.2
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 4.1e-304 1048.1 942 59.4
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 2.6e-303 1045.4 935 60.3
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 5.9e-303 1044.3 950 59.9
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.9e-301 1039.3 938 59.3
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 3.3e-298 1028.5 950 58.5
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 3.2e-293 1011.9 948 58.2
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 9.4e-293 1010.4 940 58.5
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 2.0e-290 1002.7 955 56.4
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 2.6e-290 1002.3 943 56.7
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.8e-289 998.8 937 57.7
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.8e-289 998.0 937 57.6
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 3.5e-287 991.9 937 57.5
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.8e-286 988.4 937 57.1
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 2.7e-284 982.2 946 57.7
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.0e-283 978.4 937 56.9
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 4.0e-283 978.4 944 57.7
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 7.5e-282 974.2 944 57.3
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 3.8e-278 961.8 916 57.1
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.5e-277 959.9 859 58.8
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 1.9e-277 959.5 943 56.6
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.5e-277 959.1 916 57.0
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 4.0e-275 951.8 975 54.2
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 7.7e-271 937.6 962 54.8
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.7e-270 936.4 947 55.3
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 4.2e-269 931.8 954 55.0
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.1e-268 929.5 937 55.4
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 4.7e-268 928.3 944 53.5
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 4.7e-268 928.3 945 54.7
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 4.4e-266 921.8 933 54.0
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 2.2e-265 919.5 949 54.3
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 4.9e-265 918.3 839 58.2
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 1.4e-264 916.8 947 54.6
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 9.2e-264 914.1 938 53.8
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 1.3e-262 910.2 854 56.2
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 4.3e-261 905.2 976 52.2
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 7.3e-261 904.4 969 52.1
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 6.8e-259 897.9 949 54.1
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 3.7e-257 892.1 955 51.9
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 1.9e-253 879.8 842 55.8
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 2.3e-251 872.8 950 51.9
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 2.3e-251 872.8 950 51.9
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 6.8e-251 871.3 943 51.7
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.2e-250 870.5 932 52.4
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 2.6e-250 869.4 958 50.6
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 7.5e-250 867.8 869 54.7
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 2.7e-247 859.4 946 51.1
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.7e-246 856.7 952 50.6
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 3.3e-245 852.4 861 53.5
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 2.3e-243 846.3 942 50.3
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 5.8e-242 841.6 940 50.3
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 1.4e-240 837.0 956 50.3
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 4.1e-240 835.5 945 50.2
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 2.1e-239 833.2 946 50.6
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 3.0e-238 829.3 990 48.5
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 6.6e-238 828.2 946 50.2
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 6.6e-238 828.2 946 50.2
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 8.6e-238 827.8 883 51.5
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 2.5e-237 826.2 949 50.3
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.8e-233 812.4 702 59.5
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.4e-233 811.6 781 56.1
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 7.8e-231 804.7 940 49.0
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.5e-229 800.4 940 48.8
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 4.3e-229 798.9 829 51.0
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.9e-224 783.5 932 49.6
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.3e-217 760.8 772 54.0
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 2.4e-216 756.5 940 47.1
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 4.6e-215 752.3 975 46.2
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 3.5e-207 726.1 544 65.4
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.9e-201 706.4 538 64.1
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.6e-196 690.6 540 63.7
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 6.3e-196 688.7 595 56.3
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 2.6e-186 656.8 650 54.3
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 4.3e-152 543.1 635 50.2
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 4.6e-138 496.5 388 62.9
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 5.0e-137 493.0 466 52.4
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 3.0e-113 414.1 406 53.2
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 1.2e-106 392.1 441 54.2
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.3e-84 318.9 384 50.8
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 7.4e-80 303.1 422 45.7
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.1e-62 246.1 308 44.2
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 3.7e-47 194.5 767 25.7
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 7.0e-46 190.3 151 57.0
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.7e-44 185.7 490 31.0
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.7e-44 185.7 490 31.0
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.0e-44 184.1 486 30.9
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 6.5e-44 183.7 181 56.9
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 9.5e-43 179.9 389 32.6
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 8.6e-36 156.8 194 46.4
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.4e-30 138.7 487 27.5
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.6e-26 124.8 326 30.7
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 2.2e-23 115.5 408 27.7
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 8.9e-17 93.6 421 24.7
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 5.8e-16 90.9 478 23.8
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.4e-14 86.3 73 61.6
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.7e-12 79.3 198 29.3
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.8e-09 69.3 110 42.7
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 4.0e-09 68.2 62 62.9
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 9.9e-08 63.5 86 40.7
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 2.9e-07 62.0 114 32.5
Solyc02g069390.2 Solanum lycopersicum HOM05D003725 ORTHO05D004294 8.4e-07 60.5 98 35.7
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 3.2e-06 58.5 169 26.0
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 3.2e-06 58.5 236 25.4
Sopen02g018540 Solanum pennellii HOM05D003725 ORTHO05D004294 3.2e-06 58.5 95 34.7
vmacro03493 Vaccinium macrocarpon HOM05D003725 ORTHO05D004294 3.2e-06 58.5 117 31.6
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 5.4e-06 57.8 96 33.3
SGA_v2.0_scaffold298G47656 Striga asiatica HOM05D003725 ORTHO05D004294 5.4e-06 57.8 115 33.9
Sopen02g009780 Solanum pennellii HOM05D003725 ORTHO05D004294 7.1e-06 57.4 91 35.2
Solyc02g030460.2 Solanum lycopersicum HOM05D003725 ORTHO05D004294 9.2e-06 57.0 91 34.1


User provided reference genes

Program Settings