Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 3.4e-181 638.3 332 100.0
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 3.1e-126 455.7 355 73.0
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 1.2e-117 427.2 352 68.5
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 6.3e-103 378.3 368 60.1
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 8.2e-103 377.9 371 59.6
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 2.2e-100 369.8 357 58.8
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 3.8e-100 369.0 365 60.0
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 5.0e-100 368.6 381 57.7
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.5e-99 366.3 367 58.9
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 4.2e-99 365.5 359 58.2
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 4.2e-99 365.5 372 57.8
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 5.5e-99 365.2 372 58.3
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 7.2e-99 364.8 371 58.0
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 2.1e-98 363.2 354 58.2
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 4.7e-98 362.1 360 57.8
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 6.1e-98 361.7 371 58.0
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 2.3e-97 359.8 332 59.9
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 3.0e-97 359.4 387 55.3
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 5.1e-97 358.6 376 55.6
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 2.0e-96 356.7 334 60.5
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 3.3e-96 355.9 364 57.1
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 4.4e-96 355.5 379 55.9
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 5.7e-96 355.1 386 54.4
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 7.4e-96 354.8 379 56.2
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.7e-95 353.6 374 55.3
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 3.7e-95 352.4 377 54.1
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 4.8e-95 352.1 377 54.1
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 6.3e-95 351.7 406 52.7
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 2.4e-94 349.7 353 58.1
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 4.1e-94 349.0 364 56.3
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 4.1e-94 349.0 364 56.3
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 5.3e-94 348.6 365 56.2
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 5.3e-94 348.6 372 55.1
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 6.9e-94 348.2 362 55.8
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 9.1e-94 347.8 356 57.3
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.2e-93 347.4 359 56.0
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.2e-93 347.4 362 55.0
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.2e-93 347.4 365 55.6
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 2.6e-93 346.3 378 54.8
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 4.5e-93 345.5 369 56.1
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 7.7e-93 344.7 360 54.7
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 1.0e-92 344.4 359 56.0
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 1.7e-92 343.6 372 53.0
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 2.2e-92 343.2 357 54.6
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 2.9e-92 342.8 367 54.8
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 3.8e-92 342.4 392 52.6
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 3.8e-92 342.4 433 50.3
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 5.0e-92 342.0 375 53.9
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.0e-92 342.0 382 53.7
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 5.0e-92 342.0 372 54.6
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.1e-91 340.9 366 56.6
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 1.4e-91 340.5 355 55.8
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 1.9e-91 340.1 381 54.1
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 2.5e-91 339.7 375 54.4
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 2.5e-91 339.7 452 48.2
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 4.2e-91 339.0 384 52.9
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 5.5e-91 338.6 367 55.3
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 7.2e-91 338.2 374 53.7
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.2e-90 337.4 370 52.4
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.6e-90 337.0 370 53.2
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 2.1e-90 336.7 359 56.3
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 2.1e-90 336.7 382 52.4
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 2.7e-90 336.3 371 53.6
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.7e-90 336.3 373 51.5
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 3.6e-90 335.9 369 54.2
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 4.7e-90 335.5 368 55.7
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 4.7e-90 335.5 371 53.4
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 6.1e-90 335.1 367 53.1
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.4e-89 334.0 422 49.5
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.8e-89 333.6 340 55.0
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 3.0e-89 332.8 393 51.4
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 3.0e-89 332.8 373 52.0
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 5.2e-89 332.0 381 51.2
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 5.2e-89 332.0 377 51.5
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.1e-88 330.9 363 55.6
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.1e-88 330.9 331 56.2
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.1e-88 330.9 355 52.7
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 1.1e-88 330.9 372 52.4
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 2.0e-88 330.1 353 55.2
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.6e-88 329.7 369 54.5
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.3e-87 327.4 371 53.1
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 2.8e-87 326.2 324 56.8
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 6.3e-87 325.1 384 51.6
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 1.4e-86 323.9 430 47.9
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.1e-86 322.8 332 53.6
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 2.0e-85 320.1 349 53.0
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 2.6e-85 319.7 389 49.9
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 4.5e-85 318.9 376 49.7
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 5.9e-85 318.5 358 52.5
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 7.7e-85 318.2 339 55.8
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 1.7e-84 317.0 396 48.5
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 3.8e-84 315.8 356 52.5
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 6.5e-84 315.1 352 54.3
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 4.2e-83 312.4 366 51.4
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 1.4e-81 307.4 354 52.5
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 2.2e-79 300.1 382 49.7
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 1.0e-76 291.2 417 45.6
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.5e-75 287.3 319 53.9
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 1.6e-74 283.9 450 42.0
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 4.7e-74 282.3 339 47.5
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.8e-73 280.4 363 47.1
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 9.8e-72 274.6 333 52.6
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 2.8e-71 273.1 335 51.9
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 2.1e-66 256.9 315 50.8
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.7e-61 240.0 165 71.5
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 4.7e-58 229.2 328 40.9
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 1.3e-55 221.1 142 77.5
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 2.5e-51 206.8 359 38.2
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 4.3e-51 206.1 329 38.9
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 1.6e-50 204.1 136 71.3
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 8.0e-50 201.8 327 37.6
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.2e-42 177.9 308 40.6
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 6.8e-41 172.2 114 75.4
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 6.6e-36 155.6 284 40.5
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 5.4e-30 136.0 229 34.5
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 5.3e-25 119.4 179 40.2
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.1e-22 111.7 89 68.5
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.9e-22 110.9 202 33.2
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 1.0e-20 105.1 175 35.4
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 8.7e-20 102.1 64 75.0
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 1.5e-19 101.3 58 84.5
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 4.3e-19 99.8 183 39.9
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 2.2e-15 87.4 61 67.2
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 4.2e-14 83.2 55 70.9
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 5.4e-14 82.8 63 66.7


User provided reference genes

Program Settings