Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.3e-64 249.6 133 100.0
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.2e-43 179.1 130 71.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.9e-43 178.7 130 71.5
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.9e-43 178.7 130 71.5
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.4e-42 176.4 96 91.7
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 1.4e-42 176.4 114 79.8
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.4e-42 176.4 114 78.9
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.5e-42 175.6 123 74.8
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.5e-42 175.6 123 74.8
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 3.2e-42 175.3 117 77.8
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 5.5e-42 174.5 114 78.1
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 7.2e-42 174.1 131 72.5
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 9.4e-42 173.7 104 83.7
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.6e-41 172.9 130 72.3
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.6e-41 171.8 130 70.0
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 6.1e-41 171.0 116 75.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.4e-40 169.9 110 80.0
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.8e-40 169.5 122 73.8
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.3e-40 169.1 117 76.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 3.9e-40 168.3 129 71.3
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.5e-39 166.4 121 73.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.3e-39 165.2 123 72.4
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 7.4e-39 164.1 117 73.5
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 9.7e-39 163.7 118 75.4
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 9.7e-39 163.7 103 79.6
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 9.7e-39 163.7 118 73.7
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.3e-38 163.3 121 71.9
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.7e-38 162.9 125 70.4
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.2e-38 162.5 118 72.9
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.2e-38 162.5 104 79.8
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 2.8e-38 162.2 117 74.4
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 3.7e-38 161.8 118 70.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.7e-38 161.8 121 71.1
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.8e-38 161.4 131 68.7
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.8e-38 161.4 131 68.7
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.8e-38 161.4 106 76.4
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 4.8e-38 161.4 106 76.4
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 4.8e-38 161.4 118 69.5
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 6.3e-38 161.0 122 71.3
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 6.3e-38 161.0 121 71.1
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 8.2e-38 160.6 107 73.8
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.1e-37 160.2 118 68.6
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.1e-37 160.2 118 71.2
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-37 160.2 116 73.3
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.4e-37 159.8 118 69.5
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.8e-37 159.5 121 66.9
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.1e-37 158.3 121 70.2
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 5.3e-37 157.9 113 71.7
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 7.0e-37 157.5 117 67.5
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 7.0e-37 157.5 118 69.5
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 7.0e-37 157.5 121 70.2
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 9.1e-37 157.1 117 67.5
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 9.1e-37 157.1 114 70.2
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 9.1e-37 157.1 113 70.8
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.2e-36 156.8 123 68.3
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.6e-36 155.6 113 70.8
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 4.5e-36 154.8 118 66.1
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.9e-36 154.5 118 68.6
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-35 153.7 118 67.8
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.0e-35 153.7 113 68.1
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-35 153.3 119 67.2
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-35 153.3 113 69.9
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-35 153.3 119 67.2
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.7e-35 152.9 103 74.8
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.2e-35 152.5 118 69.5
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.9e-35 152.1 120 64.2
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.9e-35 152.1 118 69.5
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.9e-35 152.1 118 69.5
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.8e-35 151.8 101 75.2
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 5.0e-35 151.4 118 67.8
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 5.0e-35 151.4 118 66.9
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 5.0e-35 151.4 118 66.9
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 5.0e-35 151.4 117 69.2
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 8.5e-35 150.6 118 68.6
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 8.5e-35 150.6 122 66.4
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.1e-34 150.2 120 65.8
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.1e-34 150.2 117 65.0
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-34 149.8 113 66.4
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.5e-34 149.8 121 66.9
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.5e-34 149.8 119 65.5
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.9e-34 149.4 106 68.9
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.9e-34 149.4 117 65.8
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.5e-34 149.1 100 75.0
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 3.2e-34 148.7 118 66.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 3.2e-34 148.7 118 66.1
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 4.2e-34 148.3 112 66.1
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 4.2e-34 148.3 112 66.1
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.2e-34 148.3 130 61.5
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.2e-34 148.3 121 66.1
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 5.5e-34 147.9 105 69.5
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 7.2e-34 147.5 118 65.3
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 7.2e-34 147.5 117 65.8
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.2e-33 146.7 103 71.8
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.6e-33 146.4 114 65.8
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.6e-33 146.4 129 63.6
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.6e-33 146.4 112 67.0
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.1e-33 146.0 108 70.4
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.1e-33 146.0 111 67.6
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.6e-33 145.2 118 63.6
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.1e-33 144.4 120 65.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.0e-33 144.1 100 72.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.0e-33 144.1 100 72.0
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-32 143.7 115 66.1
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.0e-32 143.7 100 72.0
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 3.0e-32 142.1 100 71.0
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 4.0e-32 141.7 102 74.5
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 5.2e-32 141.4 115 65.2
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.2e-32 141.4 115 65.2
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.2e-31 140.2 98 70.4
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.3e-30 136.7 130 61.5
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 2.8e-30 135.6 111 66.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 3.7e-30 135.2 130 61.5
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 4.8e-30 134.8 102 68.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 6.3e-30 134.4 95 72.6
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.4e-29 133.3 103 67.0
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.8e-29 132.9 117 59.0
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 5.3e-29 131.3 107 60.7
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 5.9e-28 127.9 130 55.4
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.3e-27 126.7 130 55.4
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.6e-25 119.8 100 62.0
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.6e-25 119.8 100 63.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 4.7e-25 118.2 95 63.2
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 5.2e-24 114.8 69 79.7
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.5e-23 113.2 108 57.4
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 3.4e-23 112.1 70 75.7
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 7.5e-23 110.9 103 57.3
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.0e-21 104.4 81 69.1
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.5e-20 101.7 86 61.6
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.0e-19 100.5 88 59.1
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.0e-19 100.5 88 59.1
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 2.3e-19 99.4 100 53.0
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 8.6e-19 97.4 68 70.6
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.5e-18 95.9 67 70.1
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-17 92.0 69 66.7
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 8.0e-17 90.9 56 75.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.2e-15 87.0 64 65.6
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.7e-14 83.2 55 72.7
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.8e-14 82.4 74 58.1
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 4.9e-14 81.6 111 46.8
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 7.0e-13 77.8 72 56.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-12 77.0 85 51.8
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.2e-12 77.0 57 64.9
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 2.9e-11 72.4 115 41.7
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 3.9e-11 72.0 86 47.7
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.0e-11 71.6 67 55.2
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.9e-10 69.7 103 40.8
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 2.8e-09 65.9 78 55.1
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.0e-08 63.9 52 69.2
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.8e-08 63.2 63 61.9
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.1e-08 62.4 81 46.9
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 5.2e-08 61.6 128 34.4
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.5e-07 60.1 59 50.8
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.4e-07 58.5 35 82.9
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 7.5e-07 57.8 45 64.4


User provided reference genes

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