Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 9.7e-161 570.1 287 100.0
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 7.6e-97 357.8 263 71.9
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.0e-93 347.4 250 74.8
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 7.1e-87 324.7 280 65.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 8.7e-85 317.8 254 69.3
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 3.4e-81 305.8 256 67.6
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.4e-81 305.8 249 67.5
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.5e-81 305.4 247 68.4
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 2.2e-80 303.1 245 64.9
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.4e-79 300.4 246 68.3
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 3.2e-79 299.3 244 66.8
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 4.2e-79 298.9 254 66.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 7.1e-79 298.1 231 68.4
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 7.9e-78 294.7 248 66.9
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.0e-77 294.3 245 65.7
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.3e-77 293.9 254 64.6
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.8e-77 293.5 249 63.1
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 3.0e-77 292.7 254 66.1
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 3.9e-77 292.4 251 65.3
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.5e-76 290.4 249 64.3
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.3e-75 287.3 217 71.0
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.3e-75 287.3 249 63.9
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.6e-75 287.0 232 67.2
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.6e-75 287.0 249 63.5
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.7e-75 285.8 254 61.8
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 8.2e-75 284.6 274 59.9
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.4e-74 283.9 249 66.3
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.8e-74 283.5 254 62.6
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 3.1e-74 282.7 249 65.5
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 3.1e-74 282.7 246 63.4
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 9.0e-74 281.2 213 70.4
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.5e-73 280.4 249 63.9
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.5e-73 280.4 242 64.5
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 7.6e-73 278.1 254 63.8
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 7.6e-73 278.1 254 61.8
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 7.6e-73 278.1 247 64.0
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 2.2e-72 276.6 236 65.7
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 2.2e-72 276.6 251 62.2
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 3.8e-72 275.8 248 62.9
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 4.9e-72 275.4 241 64.7
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.1e-71 274.2 244 63.1
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.9e-71 273.5 254 59.8
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 3.2e-71 272.7 255 61.2
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 3.2e-71 272.7 235 63.8
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 4.2e-71 272.3 254 59.8
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 5.5e-71 271.9 248 61.3
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.2e-70 270.8 254 61.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.6e-70 270.4 244 62.3
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.6e-70 270.4 256 61.7
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.1e-70 270.0 212 67.5
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.5e-70 269.2 246 61.8
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.9e-70 268.1 244 61.9
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.0e-69 267.7 196 72.4
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.0e-69 267.7 258 59.7
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 3.0e-69 266.2 255 60.4
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.9e-69 265.8 249 59.0
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 5.1e-69 265.4 239 62.3
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.5e-68 263.8 214 65.4
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 3.3e-68 262.7 242 60.7
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.3e-68 262.7 262 58.4
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 4.3e-68 262.3 268 56.3
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 9.7e-68 261.2 216 65.3
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-67 260.8 249 59.8
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.6e-67 260.4 248 58.9
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.8e-67 259.6 249 59.4
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.8e-67 259.6 217 65.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 4.8e-67 258.8 251 56.2
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.8e-67 258.8 249 59.0
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.1e-66 257.7 263 58.6
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 5.3e-66 255.4 331 50.8
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 6.9e-66 255.0 218 63.3
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.2e-65 254.2 230 62.2
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.0e-65 253.4 257 55.3
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.6e-65 253.1 234 59.8
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.6e-65 253.1 245 57.6
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 7.7e-65 251.5 245 58.4
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 7.7e-65 251.5 291 52.6
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.0e-64 251.1 244 57.0
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 2.9e-64 249.6 249 58.2
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 8.5e-64 248.1 241 57.7
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 8.5e-64 248.1 241 57.7
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.9e-63 246.9 223 60.5
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.5e-63 246.5 264 52.7
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 7.2e-63 245.0 238 58.8
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 9.4e-63 244.6 272 52.9
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.6e-62 243.8 267 54.3
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 3.0e-61 239.6 244 57.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 3.9e-61 239.2 258 54.3
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 3.9e-61 239.2 248 56.9
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 5.1e-61 238.8 262 53.8
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 5.1e-61 238.8 186 69.9
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 6.7e-61 238.4 257 54.5
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 6.7e-61 238.4 257 54.5
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.1e-60 237.7 229 57.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-60 237.7 257 54.5
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.5e-60 236.5 257 54.1
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 4.3e-60 235.7 213 57.7
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.7e-59 233.8 270 54.1
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 2.2e-59 233.4 231 55.8
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.2e-59 231.5 240 55.0
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.1e-58 231.1 244 55.3
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.1e-58 229.6 257 52.1
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 3.1e-58 229.6 230 56.5
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 4.1e-58 229.2 253 53.4
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 5.3e-58 228.8 223 60.1
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 4.5e-57 225.7 189 67.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.2e-55 219.5 262 48.5
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 7.2e-55 218.4 218 58.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.6e-54 217.2 229 56.8
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.1e-54 216.9 196 56.6
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 3.6e-54 216.1 250 51.2
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.3e-53 213.4 186 66.1
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 6.7e-53 211.8 254 49.2
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 4.4e-52 209.1 228 54.4
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 7.4e-52 208.4 226 54.0
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.7e-51 207.2 255 51.4
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.8e-51 206.5 226 53.5
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.7e-51 206.1 207 57.5
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 3.7e-51 206.1 246 50.0
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 7.0e-50 201.8 250 49.6
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 7.0e-50 201.8 186 62.4
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-49 200.3 230 53.0
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 7.7e-49 198.4 201 57.7
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.2e-46 191.0 189 57.7
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 2.7e-46 189.9 170 55.9
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.7e-46 189.1 213 53.5
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.3e-45 186.8 192 51.6
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 2.3e-45 186.8 183 56.3
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.4e-44 182.6 178 59.0
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 7.4e-44 181.8 251 45.0
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 7.4e-44 181.8 235 46.8
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 7.0e-42 175.3 202 50.5
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.5e-41 172.9 113 69.9
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.3e-40 171.0 148 55.4
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-39 167.2 180 51.7
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.0e-37 161.4 147 67.3
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 8.8e-37 158.3 204 47.1
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 4.8e-35 152.5 148 66.2
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.4e-34 150.2 121 61.2
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.6e-33 147.5 170 46.5
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.1e-31 141.4 142 64.1
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 2.7e-30 136.7 150 58.0
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.7e-30 136.0 85 72.9
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 6.1e-30 135.6 106 60.4
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 5.2e-29 132.5 167 56.3
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.6e-28 130.2 148 58.1
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.6e-28 130.2 138 61.6
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.3e-27 127.9 164 53.7
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.2e-27 127.1 165 45.5
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 6.3e-27 125.6 149 57.7
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 4.1e-26 122.9 251 40.6
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.5e-25 119.4 155 54.2
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 8.0e-22 108.6 194 37.1
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.0e-21 108.2 63 71.4
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 5.2e-21 105.9 105 48.6
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 8.3e-19 98.6 121 41.3
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 8.3e-19 98.6 140 47.9
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.4e-18 97.8 258 35.3
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 8.6e-16 88.6 98 61.2
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 2.5e-15 87.0 94 53.2
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 4.7e-14 82.8 92 60.9
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.0e-13 79.7 106 50.9
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 4.4e-12 76.3 114 43.0
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 5.8e-12 75.9 60 65.0
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 7.5e-12 75.5 78 47.4
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.7e-11 73.2 68 52.9
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.1e-10 71.6 75 49.3
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 7.0e-10 68.9 61 59.0
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 8.6e-08 62.0 50 52.0
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.5e-07 61.2 58 69.0
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 1.5e-07 61.2 58 69.0
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.5e-07 61.2 59 47.5
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 3.3e-07 60.1 48 50.0
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 7.3e-07 58.9 100 38.0
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 1.2e-06 58.2 100 38.0
HPP92_018239 Vanilla planifolia HOM05D002798 ORTHO05D003052 4.7e-06 56.2 106 30.2


User provided reference genes

Program Settings