Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 5.2e-57 224.2 114 100.0
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.5e-53 211.5 114 93.9
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.5e-51 205.3 112 92.9
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 3.4e-48 194.9 114 86.0
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.2e-47 192.2 106 91.5
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.9e-47 191.8 108 87.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 4.9e-47 191.0 108 85.2
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 4.9e-47 191.0 112 82.1
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 6.4e-47 190.7 108 85.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.4e-47 190.7 108 86.1
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 6.4e-47 190.7 108 86.1
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 8.3e-47 190.3 108 85.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.4e-46 189.5 112 82.1
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.4e-46 189.5 112 82.1
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.4e-46 189.5 112 82.1
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 2.4e-46 188.7 108 86.1
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.1e-46 188.0 113 82.3
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 5.4e-46 187.6 108 85.2
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.4e-46 187.6 108 86.1
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 5.4e-46 187.6 108 86.1
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 7.0e-46 187.2 107 85.0
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 7.0e-46 187.2 110 82.7
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 9.2e-46 186.8 108 84.3
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.2e-45 186.4 110 80.9
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.2e-45 186.4 114 81.6
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.6e-45 186.0 108 82.4
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.0e-45 185.7 112 78.6
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.7e-45 185.3 108 82.4
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 2.7e-45 185.3 111 82.9
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.5e-45 184.9 108 82.4
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 3.5e-45 184.9 108 83.3
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.6e-45 184.5 113 80.5
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 6.0e-45 184.1 114 81.6
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.0e-44 183.3 108 81.5
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.0e-44 183.3 108 84.3
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.0e-44 183.3 113 80.5
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.3e-44 183.0 107 83.2
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.3e-44 183.0 113 80.5
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.7e-44 182.6 109 79.8
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 2.3e-44 182.2 108 83.3
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.3e-44 182.2 113 79.6
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.3e-44 182.2 108 80.6
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 3.9e-44 181.4 105 84.8
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 3.9e-44 181.4 105 84.8
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 3.9e-44 181.4 105 84.8
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 3.9e-44 181.4 113 77.9
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 5.0e-44 181.0 106 83.0
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 5.0e-44 181.0 105 83.8
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 5.0e-44 181.0 105 83.8
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.0e-44 181.0 108 80.6
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 5.0e-44 181.0 108 81.5
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 5.0e-44 181.0 106 81.1
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.6e-44 180.3 110 79.1
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.6e-44 180.3 110 79.1
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.1e-43 179.9 110 80.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.5e-43 179.5 104 85.6
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.5e-43 179.5 108 79.6
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.9e-43 179.1 108 80.6
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 2.5e-43 178.7 119 76.5
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.5e-43 178.7 107 81.3
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.5e-43 178.7 107 79.4
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 2.5e-43 178.7 112 76.8
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.5e-43 178.7 115 79.1
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.5e-43 178.7 113 78.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 3.3e-43 178.3 110 79.1
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 3.3e-43 178.3 105 82.9
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.3e-43 178.3 108 78.7
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.3e-43 178.3 112 77.7
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 5.6e-43 177.6 113 77.9
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 7.3e-43 177.2 108 78.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 9.5e-43 176.8 102 86.3
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.6e-42 176.0 106 82.1
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.1e-42 175.6 110 78.2
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.7e-42 174.5 110 77.3
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 6.2e-42 174.1 109 76.1
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.1e-41 173.3 111 78.4
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-41 172.9 107 77.6
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.4e-41 172.9 107 77.6
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.4e-41 172.9 104 82.7
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.8e-41 172.6 108 78.7
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 2.3e-41 172.2 111 75.7
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 4.0e-41 171.4 108 77.8
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 5.2e-41 171.0 108 75.9
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 5.2e-41 171.0 107 76.6
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 8.9e-41 170.2 115 74.8
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.0e-40 169.1 87 98.9
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.6e-40 168.7 111 76.6
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 2.6e-40 168.7 98 82.7
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.4e-40 168.3 111 75.7
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 4.4e-40 167.9 104 77.9
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 4.4e-40 167.9 112 71.4
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 5.8e-40 167.5 108 75.0
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 7.5e-40 167.2 111 75.7
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 7.5e-40 167.2 108 72.2
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.7e-39 166.0 104 76.0
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-39 165.6 112 74.1
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.9e-39 165.2 112 72.3
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 2.9e-39 165.2 112 71.4
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 8.3e-39 163.7 108 73.1
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.9e-38 162.5 108 74.1
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.9e-38 162.5 105 74.3
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.4e-38 161.0 93 82.8
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 9.2e-38 160.2 111 72.1
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 7.8e-37 157.1 111 72.1
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 2.3e-36 155.6 105 73.3
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.9e-36 154.8 90 82.2
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 5.1e-36 154.5 107 72.0
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 5.1e-36 154.5 114 67.5
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.1e-35 153.3 112 62.5
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 3.3e-35 151.8 107 71.0
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.6e-34 148.3 98 77.6
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 3.1e-33 145.2 86 83.7
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 4.0e-33 144.8 103 70.9
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 4.0e-33 144.8 86 83.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 4.0e-33 144.8 110 64.5
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 5.2e-33 144.4 108 71.3
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 8.9e-33 143.7 86 81.4
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.2e-32 143.3 86 83.7
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.3e-31 139.8 108 63.9
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 2.2e-31 139.0 107 64.5
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 3.8e-31 138.3 86 77.9
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 3.8e-31 138.3 86 77.9
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 5.4e-30 134.4 99 66.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 7.1e-30 134.0 86 77.9
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.6e-29 132.9 85 76.5
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.6e-29 132.9 82 74.4
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.7e-29 132.1 83 78.3
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.5e-29 131.7 112 60.7
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 7.8e-29 130.6 117 59.8
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.0e-28 130.2 108 59.3
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 1.7e-28 129.4 103 65.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 6.6e-28 127.5 108 62.0
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.1e-27 126.7 113 54.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.6e-26 122.9 88 63.6
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 8.1e-26 120.6 108 60.2
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.6e-24 115.5 90 66.7
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.7e-23 112.8 112 48.2
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 4.9e-23 111.3 104 58.7
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 4.9e-23 111.3 103 54.4
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 8.4e-23 110.5 107 49.5
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.1e-22 110.2 110 56.4
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.9e-22 109.4 104 54.8
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 3.2e-22 108.6 104 51.9
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 5.4e-22 107.8 107 51.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.6e-21 106.3 106 49.1
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.1e-21 105.9 64 84.4
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.1e-21 105.9 108 52.8
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.7e-21 105.5 106 53.8
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.5e-21 105.1 73 74.0
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 6.0e-21 104.4 111 50.5
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.8e-21 104.0 114 47.4
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.7e-20 102.8 115 47.0
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.4e-17 93.2 61 73.8
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 9.0e-17 90.5 49 89.8
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.5e-08 63.2 53 50.9
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 5.8e-08 61.2 61 50.8
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 6.4e-07 57.8 35 77.1


User provided reference genes

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