Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0430991 Helianthus annuus HOM05D005369 ORTHO05D006955 1.1e-63 246.5 126 100.0
HanXRQChr02g0043381 Helianthus annuus HOM05D005369 ORTHO05D006955 2.7e-38 162.2 135 70.4
ECA246G2775 Erigeron canadensis HOM05D005369 ORTHO05D006955 1.5e-33 146.4 134 64.2
Manes.14G096800 Manihot esculenta HOM05D005369 ORTHO05D006955 9.9e-33 143.7 135 62.2
Cpa.g.sc53.119 Carica papaya HOM05D005369 ORTHO05D006955 1.7e-32 142.9 135 62.2
Nn4g23711 Nelumbo nucifera HOM05D005369 ORTHO05D006955 1.7e-32 142.9 135 61.5
Potri.010G130300 Populus trichocarpa HOM05D005369 ORTHO05D006955 3.7e-32 141.7 135 62.2
Potri.008G115700 Populus trichocarpa HOM05D005369 ORTHO05D006955 6.4e-32 141.0 133 62.4
Cc11_g10670 Coffea canephora HOM05D005369 ORTHO05D006955 8.4e-32 140.6 135 58.5
Sabra08G0087600 Salix brachista HOM05D005369 ORTHO05D006955 1.4e-31 139.8 133 62.4
DCAR_030087 Daucus carota HOM05D005369 ORTHO05D006955 1.9e-31 139.4 135 57.8
Lj3A1020T60 Lonicera japonica HOM05D005369 ORTHO05D006955 2.4e-31 139.0 135 57.8
GSVIVG01011963001 Vitis vinifera HOM05D000398 ORTHO05D000551 3.2e-31 138.7 135 60.0
arahy.Tifrunner.gnm1.ann1.1BLX98 Arachis hypogaea HOM05D005369 ORTHO05D006955 4.1e-31 138.3 135 59.3
arahy.Tifrunner.gnm1.ann1.DD8P8M Arachis hypogaea HOM05D005369 ORTHO05D006955 4.1e-31 138.3 135 59.3
Atru.chr11.1367 Acer truncatum HOM05D005369 ORTHO05D006955 5.4e-31 137.9 135 57.8
Nitab4.5_0005803g0060 Nicotiana tabacum HOM05D005369 ORTHO05D006955 7.1e-31 137.5 135 57.8
Cfa018636 Carpinus fangiana HOM05D005369 ORTHO05D006955 1.2e-30 136.7 135 59.3
Haze_17433 Corylus avellana HOM05D005369 ORTHO05D006955 1.2e-30 136.7 135 59.3
HanXRQChr17g0551311 Helianthus annuus HOM05D005369 ORTHO05D006955 1.2e-30 136.7 126 66.7
Thecc.02G362000 Theobroma cacao HOM05D005369 ORTHO05D006955 1.2e-30 136.7 135 59.3
CSS0041757 Camellia sinensis var. sinensis HOM05D005369 ORTHO05D006955 1.6e-30 136.3 135 58.5
CiPaw.15G002800 Carya illinoinensis HOM05D005369 ORTHO05D006955 1.6e-30 136.3 135 59.3
HPP92_005307 Vanilla planifolia HOM05D005369 ORTHO05D006955 1.6e-30 136.3 138 55.8
Aqoxy5G00581 Aquilegia oxysepala HOM05D005369 ORTHO05D006955 2.1e-30 136.0 135 57.8
Prupe.1G304600 Prunus persica HOM05D005369 ORTHO05D006955 2.1e-30 136.0 134 60.4
Hund05770 Selenicereus undatus HOM05D005369 ORTHO05D006955 2.1e-30 136.0 135 59.3
DCAR_007223 Daucus carota HOM05D005369 ORTHO05D006955 2.7e-30 135.6 135 57.0
Lsat_1_v5_gn_3_58161 Lactuca sativa HOM05D005369 ORTHO05D006955 2.7e-30 135.6 134 59.0
PGR119G0805 Punica granatum HOM05D005369 ORTHO05D006955 2.7e-30 135.6 135 58.5
TAR374G1244 Trochodendron aralioides HOM05D005369 ORTHO05D006955 3.5e-30 135.2 135 58.5
QL01p001045 Quercus lobata HOM05D005369 ORTHO05D006955 4.6e-30 134.8 135 58.5
Solyc05g009910.3 Solanum lycopersicum HOM05D005369 ORTHO05D006955 4.6e-30 134.8 135 57.8
Sopen05g005710 Solanum pennellii HOM05D005369 ORTHO05D006955 4.6e-30 134.8 135 57.8
PGSC0003DMG400000806 Solanum tuberosum HOM05D005369 ORTHO05D006955 4.6e-30 134.8 135 57.8
TWI31G0309 Tripterygium wilfordii HOM05D005369 ORTHO05D006955 7.8e-30 134.0 135 59.3
Eucgr.G02355 Eucalyptus grandis HOM05D005369 ORTHO05D006955 1.0e-29 133.7 135 57.8
Lalb_Chr21g0313361 Lupinus albus HOM05D005369 ORTHO05D006955 1.0e-29 133.7 135 57.0
Sed0002723 Sechium edule HOM05D005369 ORTHO05D006955 1.3e-29 133.3 135 57.8
Actinidia14846 Actinidia chinensis HOM05D005369 ORTHO05D006955 1.7e-29 132.9 133 57.1
CAN.G184.84 Capsicum annuum HOM05D005369 ORTHO05D006955 1.7e-29 132.9 135 56.3
Nitab4.5_0011812g0010 Nicotiana tabacum HOM05D005369 ORTHO05D006955 1.7e-29 132.9 141 54.6
AUR62002925 Chenopodium quinoa HOM05D005369 ORTHO05D006955 2.3e-29 132.5 135 56.3
Duzib248G0106 Durio zibethinus HOM05D005369 ORTHO05D006955 3.0e-29 132.1 135 57.0
Gohir.A12G171800 Gossypium hirsutum HOM05D005369 ORTHO05D006955 3.0e-29 132.1 135 58.5
Gohir.D12G174200 Gossypium hirsutum HOM05D005369 ORTHO05D006955 3.0e-29 132.1 135 58.5
Gorai.008G186900 Gossypium raimondii HOM05D005369 ORTHO05D006955 3.0e-29 132.1 135 58.5
MD13G1047300 Malus domestica HOM05D005369 ORTHO05D006955 3.0e-29 132.1 135 58.5
Phvul.003G026300 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 3.0e-29 132.1 138 56.5
THA.LOC104800064 Tarenaya hassleriana HOM05D005369 ORTHO05D006955 3.0e-29 132.1 135 57.0
TAR374G0397 Trochodendron aralioides HOM05D005369 ORTHO05D006955 3.0e-29 132.1 135 57.0
Duzib251G0390 Durio zibethinus HOM05D005369 ORTHO05D006955 3.9e-29 131.7 135 57.0
Phvul.001G005600 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 3.9e-29 131.7 135 58.5
vmacro11462 Vaccinium macrocarpon HOM05D005369 ORTHO05D006955 3.9e-29 131.7 135 57.0
CANSAT64G0649 Cannabis sativa HOM05D005369 ORTHO05D006955 5.1e-29 131.3 133 54.9
PSO063G4132 Papaver somniferum HOM05D005369 ORTHO05D006955 5.1e-29 131.3 138 55.8
Sc11g0003050 Simmondsia chinensis HOM05D005369 ORTHO05D006955 5.1e-29 131.3 135 56.3
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 6.6e-29 131.0 135 57.8
COL.COLO4_07861 Corchorus olitorius HOM05D005369 ORTHO05D006955 6.6e-29 131.0 135 57.8
AUR62035293 Chenopodium quinoa HOM05D005369 ORTHO05D006955 8.6e-29 130.6 135 55.6
Hma1.2p1_0862F.1_g229880 Hydrangea macrophylla HOM05D005369 ORTHO05D006955 8.6e-29 130.6 157 51.0
Lalb_Chr02g0151791 Lupinus albus HOM05D005369 ORTHO05D006955 8.6e-29 130.6 135 56.3
MD16G1049100 Malus domestica HOM05D005369 ORTHO05D006955 8.6e-29 130.6 139 56.8
CARHR025850 Cardamine hirsuta HOM05D005369 ORTHO05D006955 1.1e-28 130.2 135 57.0
Zm00001eb431600 Zea mays HOM05D005369 ORTHO05D006955 1.1e-28 130.2 133 56.4
EL10Ac6g14509 Beta vulgaris HOM05D005369 ORTHO05D006955 1.5e-28 129.8 135 54.8
SalBow8G4109 Salvia bowleyana HOM05D005369 ORTHO05D006955 1.5e-28 129.8 138 52.9
VMungo1215G0010 Vigna mungo HOM05D005369 ORTHO05D006955 1.5e-28 129.8 135 57.0
A08p27110 Brassica napus HOM05D005369 ORTHO05D006955 1.9e-28 129.4 135 57.0
C03p72750 Brassica napus HOM05D005369 ORTHO05D006955 1.9e-28 129.4 135 57.0
BolC5t31214H Brassica oleracea HOM05D005369 ORTHO05D006955 1.9e-28 129.4 135 57.0
BraA08t34656Z Brassica rapa HOM05D005369 ORTHO05D006955 1.9e-28 129.4 135 57.0
Carub.0001s2489 Capsella rubella HOM05D005369 ORTHO05D006955 1.9e-28 129.4 134 57.5
Sp1g22610 Schrenkiella parvula HOM05D005369 ORTHO05D006955 1.9e-28 129.4 135 56.3
TAR622G0781 Trochodendron aralioides HOM05D005369 ORTHO05D006955 1.9e-28 129.4 139 55.4
TAR622G1222 Trochodendron aralioides HOM05D005369 ORTHO05D006955 1.9e-28 129.4 139 55.4
CDE09G0148 Ceratophyllum demersum HOM05D005369 ORTHO05D009095 2.5e-28 129.0 133 57.9
TPR.G18699 Trifolium pratense HOM05D005369 ORTHO05D006955 2.5e-28 129.0 135 56.3
Ah.03g137930 Amaranthus hybridus HOM05D005369 ORTHO05D006955 3.3e-28 128.6 135 55.6
A09p39670 Brassica napus HOM05D005369 ORTHO05D006955 3.3e-28 128.6 135 57.0
BraA09t39463Z Brassica rapa HOM05D005369 ORTHO05D006955 3.3e-28 128.6 135 57.0
Thhalv10008252m.g Eutrema salsugineum HOM05D005369 ORTHO05D006955 3.3e-28 128.6 135 56.3
Glyma.01G089100 Glycine max HOM05D005369 ORTHO05D006955 3.3e-28 128.6 135 56.3
Glyma.02G100900 Glycine max HOM05D005369 ORTHO05D006955 3.3e-28 128.6 135 57.0
AL1G39700 Arabidopsis lyrata HOM05D005369 ORTHO05D006955 4.3e-28 128.3 134 56.0
AT1G25682 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 4.3e-28 128.3 134 56.0
BcaNung06366 Brassica carinata HOM05D005369 ORTHO05D006955 4.3e-28 128.3 135 56.3
CDE08G0426 Ceratophyllum demersum HOM05D005369 ORTHO05D006955 4.3e-28 128.3 132 56.1
PSO782G4917 Papaver somniferum HOM05D005369 ORTHO05D006955 4.3e-28 128.3 138 55.1
Peaxi162Scf00367g00088 Petunia axillaris HOM05D005369 ORTHO05D006955 7.3e-28 127.5 127 57.5
Rhsim09G0113000 Rhododendron simsii HOM05D005369 ORTHO05D006955 7.3e-28 127.5 146 52.1
SGA_v2.0_scaffold16G07883 Striga asiatica HOM05D005369 ORTHO05D006955 7.3e-28 127.5 135 54.8
Ca_10520_v3 Cicer arietinum L. HOM05D005369 ORTHO05D006955 9.6e-28 127.1 135 56.3
FvH4_4g28180 Fragaria vesca HOM05D005369 ORTHO05D006955 9.6e-28 127.1 135 55.6
FAN07G1070 Fragaria x ananassa HOM05D005369 ORTHO05D006955 9.6e-28 127.1 135 55.6
FAN12G2281 Fragaria x ananassa HOM05D005369 ORTHO05D006955 9.6e-28 127.1 135 55.6
FAN22G1382 Fragaria x ananassa HOM05D005369 ORTHO05D006955 9.6e-28 127.1 135 55.6
C05p24850 Brassica napus HOM05D005369 ORTHO05D006955 1.2e-27 126.7 135 55.6
ClCG05G023060 Citrullus lanatus HOM05D005369 ORTHO05D006955 1.2e-27 126.7 135 55.6
Psat6g179520 Pisum sativum HOM05D005369 ORTHO05D006955 1.2e-27 126.7 135 55.6
MSTRG.7694 Avicennia marina HOM05D005369 ORTHO05D006955 1.6e-27 126.3 135 54.1
BcaC05g26649 Brassica carinata HOM05D005369 ORTHO05D006955 2.1e-27 125.9 135 56.3
BolC3t19573H Brassica oleracea HOM05D005369 ORTHO05D006955 2.1e-27 125.9 135 56.3
Ciclev10032187m.g Citrus clementina HOM05D005369 ORTHO05D006955 2.1e-27 125.9 133 54.9
Medtr1g093770 Medicago truncatula HOM05D005369 ORTHO05D006955 2.1e-27 125.9 135 54.8
Os02g0324300 Oryza sativa ssp. japonica HOM05D005369 ORTHO05D006955 2.1e-27 125.9 133 54.9
RcHm_v2.0_Chr4g0435941 Rosa chinensis HOM05D005369 ORTHO05D006955 2.1e-27 125.9 135 54.8
MELO3C012211.2 Cucumis melo HOM05D005369 ORTHO05D006955 4.7e-27 124.8 133 55.6
ATR0681G333 Amborella trichopoda HOM05D005369 ORTHO05D006955 6.2e-27 124.4 133 54.9
Lj2g0009483 Lotus japonicus HOM05D005369 ORTHO05D006955 8.1e-27 124.0 135 54.1
Actinidia16612 Actinidia chinensis HOM05D005369 ORTHO05D006955 1.8e-26 122.9 164 47.0
CsaV3_5G033930 Cucumis sativus L. HOM05D005369 ORTHO05D006955 1.8e-26 122.9 135 54.8
FAN26G1965 Fragaria x ananassa HOM05D005369 ORTHO05D006955 1.8e-26 122.9 135 52.6
FAN28G2319 Fragaria x ananassa HOM05D005369 ORTHO05D006955 2.4e-26 122.5 135 52.6
FAN17G2107 Fragaria x ananassa HOM05D005369 ORTHO05D006955 3.1e-26 122.1 135 54.1
unitig_744.g24076 Utricularia gibba HOM05D005369 ORTHO05D006955 1.5e-25 119.8 132 53.0
BcaB03g12082 Brassica carinata HOM05D005369 ORTHO05D006955 4.4e-25 118.2 133 54.9
SEGI_22738 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 1.7e-24 116.3 133 53.4
Dinv05803 Davidia involucrata HOM05D005369 ORTHO05D006955 2.2e-24 115.9 111 59.5
Sabra10G0099400 Salix brachista HOM05D005369 ORTHO05D006955 1.9e-23 112.8 130 54.6
AagrBONN_evm.TU.Sc2ySwM_362.2009 Anthoceros agrestis HOM05D005369 ORTHO05D006955 5.1e-21 104.8 133 48.1
FvH4_1g20000 Fragaria vesca HOM05D005369 ORTHO05D006955 7.3e-20 100.9 110 50.9
FAN19G0967 Fragaria x ananassa HOM05D002945 ORTHO05D003314 7.3e-20 100.9 110 50.9
FAN23G0001 Fragaria x ananassa HOM05D002945 ORTHO05D003314 4.8e-19 98.2 108 52.8
Migut.L01099 Erythranthe guttata HOM05D005369 ORTHO05D006955 1.8e-18 96.3 129 45.7
Mapoly0084s0019 Marchantia polymorpha HOM05D005369 ORTHO05D006955 3.1e-18 95.5 134 47.0
Pp3c18_5500 Physcomitrium patens HOM05D005369 ORTHO05D006955 2.0e-17 92.8 133 46.6
SMO353G0425 Selaginella moellendorffii HOM05D005369 ORTHO05D006955 3.4e-17 92.0 133 41.4
HanXRQChr03g0063441 Helianthus annuus HOM05D005369 ORTHO05D006955 4.2e-15 85.1 54 85.2
CBR_g16048 Chara braunii HOM05D005369 ORTHO05D006955 8.7e-13 77.4 140 40.0
AT1G25988 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 4.3e-12 75.1 77 55.8
Dinv16512 Davidia involucrata HOM05D005369 ORTHO05D006955 5.3e-10 68.2 51 60.8
SEGI_28822 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 6.4e-08 61.2 129 34.1


User provided reference genes

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