Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 4.2e-104 381.3 187 100.0
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 9.0e-83 310.5 187 78.6
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 1.2e-82 310.1 187 80.2
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.0e-82 309.3 187 78.6
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 1.0e-81 307.0 187 75.9
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 1.3e-81 306.6 187 76.5
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 3.8e-81 305.1 187 76.5
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 5.0e-81 304.7 187 74.9
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 5.0e-81 304.7 187 77.0
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 6.5e-81 304.3 187 77.5
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 8.5e-81 303.9 187 77.5
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 1.1e-80 303.5 187 77.0
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.1e-80 303.5 187 75.9
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.4e-80 303.1 187 77.5
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.4e-80 303.1 187 77.5
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 1.9e-80 302.8 187 75.4
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.5e-80 302.4 187 77.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 3.2e-80 302.0 187 75.9
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 3.2e-80 302.0 186 74.7
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 4.2e-80 301.6 187 75.9
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 4.2e-80 301.6 187 74.9
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 5.5e-80 301.2 187 75.4
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 7.2e-80 300.8 187 76.5
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 7.2e-80 300.8 187 77.0
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 9.4e-80 300.4 187 77.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 9.4e-80 300.4 187 75.9
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 9.4e-80 300.4 187 76.5
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.6e-79 299.7 187 75.9
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.6e-79 299.7 187 75.9
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.1e-79 299.3 187 73.8
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.7e-79 298.9 187 74.3
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.6e-79 298.5 187 75.9
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.6e-79 298.1 187 75.9
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.6e-79 298.1 187 75.9
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 4.6e-79 298.1 187 75.4
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.0e-78 297.0 187 75.4
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 1.4e-78 296.6 187 74.3
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.8e-78 296.2 187 72.7
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.8e-78 296.2 187 75.4
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 1.8e-78 296.2 187 72.7
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 3.9e-78 295.0 187 75.4
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 5.1e-78 294.7 187 73.3
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 6.7e-78 294.3 187 73.3
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 6.7e-78 294.3 187 73.3
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 8.8e-78 293.9 187 73.3
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 8.8e-78 293.9 187 74.3
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 8.8e-78 293.9 187 72.7
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 1.1e-77 293.5 187 73.8
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 1.1e-77 293.5 199 69.3
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.1e-77 293.5 187 72.2
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.1e-77 293.5 187 72.7
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.0e-77 292.7 187 72.7
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.0e-77 292.7 187 72.7
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 2.5e-77 292.4 187 73.3
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 2.5e-77 292.4 187 71.7
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 2.5e-77 292.4 187 72.2
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 3.3e-77 292.0 187 72.7
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 3.3e-77 292.0 187 72.7
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 4.3e-77 291.6 187 72.7
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 5.7e-77 291.2 187 72.2
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 5.7e-77 291.2 187 73.8
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.7e-76 289.7 187 71.7
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 2.2e-76 289.3 187 71.1
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 4.8e-76 288.1 188 73.9
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 6.3e-76 287.7 188 71.8
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 8.2e-76 287.3 187 72.7
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 3.1e-75 285.4 187 71.7
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 3.1e-75 285.4 187 71.7
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 4.1e-75 285.0 187 69.5
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 9.1e-75 283.9 206 68.0
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.2e-74 283.5 187 70.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 5.9e-74 281.2 157 83.4
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 1.3e-73 280.0 186 69.4
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 6.5e-73 277.7 161 80.1
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.4e-72 276.6 172 75.6
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 1.9e-72 276.2 159 81.1
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 2.5e-72 275.8 210 64.3
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 1.2e-71 273.5 163 76.7
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 4.7e-71 271.6 159 79.9
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 2.0e-69 266.2 160 75.0
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 2.0e-69 266.2 187 68.4
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 3.3e-69 265.4 184 66.3
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 3.7e-68 261.9 182 67.0
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 4.8e-68 261.5 174 73.0
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 8.2e-68 260.8 160 73.1
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.1e-67 260.4 156 75.0
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.4e-67 259.2 187 69.5
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 9.1e-67 257.3 163 72.4
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 4.5e-66 255.0 159 74.2
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 5.0e-65 251.5 187 65.2
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 5.0e-65 251.5 160 72.5
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 2.5e-64 249.2 184 61.4
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.1e-61 240.4 160 70.6
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 3.3e-61 238.8 182 58.8
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 1.3e-60 236.9 225 56.4
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 8.2e-60 234.2 182 58.8
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.6e-58 229.9 146 74.0
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.3e-57 226.9 146 71.9
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.6e-55 219.9 188 62.2
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 2.0e-53 213.0 176 55.7
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 1.6e-47 193.4 122 71.3
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 3.6e-47 192.2 181 48.6
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 3.0e-46 189.1 117 69.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 5.2e-46 188.3 121 71.1
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 2.4e-43 179.5 130 62.3
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-41 173.3 197 49.2
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-41 173.3 197 49.2
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 2.2e-36 156.4 115 67.8
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 3.2e-35 152.5 181 40.9
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 1.6e-34 150.2 178 43.8
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 3.5e-34 149.1 115 60.9
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 7.8e-34 147.9 90 72.2
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 1.0e-33 147.5 100 69.0
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.5e-32 143.7 96 67.7
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 7.3e-32 141.4 177 44.1
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.6e-26 123.6 80 70.0
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 4.4e-21 105.5 65 75.4
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.1e-19 100.9 79 63.3
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.1e-19 100.9 74 62.2
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 7.1e-19 98.2 56 82.1
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 1.1e-16 90.9 56 76.8
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 5.6e-16 88.6 80 58.8
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.1e-14 84.3 51 72.5
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.3e-14 83.2 49 77.6
Cfa024503 Carpinus fangiana HOM05D006675 ORTHO05D008302 3.9e-09 65.9 166 26.5
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.2e-06 55.5 38 63.2


User provided reference genes

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