Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 6.9e-211 737.3 430 100.0
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 5.3e-171 604.7 396 85.6
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 7.5e-141 504.6 398 75.6
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 8.6e-129 464.5 409 67.0
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.5e-128 463.0 297 82.8
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.9e-123 446.8 333 71.2
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 1.9e-123 446.8 336 71.1
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 9.2e-123 444.5 328 71.0
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 3.5e-122 442.6 331 69.2
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 3.0e-121 439.5 336 71.4
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 5.1e-121 438.7 330 70.3
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 5.1e-121 438.7 330 71.2
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 6.6e-121 438.3 332 67.8
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.1e-120 437.6 332 67.2
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 1.2e-119 434.1 333 68.8
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 2.8e-119 433.0 320 71.2
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 4.7e-119 432.2 332 68.7
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.1e-118 431.0 342 65.8
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.8e-118 430.3 328 70.1
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.8e-118 430.3 358 64.8
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.8e-118 430.3 341 68.3
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.0e-118 429.1 334 67.4
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 6.8e-118 428.3 327 68.5
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.5e-117 427.2 331 67.4
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 3.4e-117 426.0 317 70.7
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 4.4e-117 425.6 322 66.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.8e-117 425.2 365 63.6
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.3e-116 424.1 342 67.3
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 2.9e-116 422.9 330 67.3
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 6.4e-116 421.8 334 66.8
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 1.1e-115 421.0 332 67.2
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 4.2e-115 419.1 330 68.5
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.6e-114 417.2 342 65.2
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.7e-114 416.4 329 65.0
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 3.5e-114 416.0 329 66.9
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.0e-113 414.5 326 66.6
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.3e-113 413.3 337 65.9
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 8.7e-113 411.4 323 68.7
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.9e-112 410.2 328 64.6
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 3.3e-112 409.5 337 65.9
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 4.3e-112 409.1 356 62.1
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 2.8e-111 406.4 339 64.9
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.4e-110 404.1 334 64.1
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.4e-110 404.1 325 67.1
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.8e-110 403.7 323 67.5
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.8e-110 403.7 346 65.3
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 2.4e-110 403.3 352 63.4
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 6.9e-110 401.7 338 63.6
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 9.0e-110 401.4 326 64.7
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.4e-109 399.4 368 60.1
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 7.6e-109 398.3 345 64.9
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 9.9e-109 397.9 334 64.1
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 2.9e-108 396.4 324 63.9
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.8e-108 396.0 325 62.8
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.4e-107 394.0 340 62.1
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 1.9e-107 393.7 328 61.9
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.9e-107 393.7 340 62.1
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 5.4e-107 392.1 328 61.6
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 5.4e-107 392.1 340 62.1
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 5.4e-107 392.1 335 61.8
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.2e-106 391.0 322 63.0
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.6e-106 390.6 334 63.5
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.1e-106 390.2 326 63.5
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.7e-106 389.8 333 64.6
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 4.6e-106 389.0 329 63.2
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 4.6e-106 389.0 336 61.9
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 4.6e-106 389.0 333 64.6
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 7.8e-106 388.3 325 63.1
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 1.0e-105 387.9 319 66.1
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.7e-105 387.1 330 61.8
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.7e-105 387.1 336 61.9
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 2.3e-105 386.7 342 60.2
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 5.1e-105 385.6 326 62.9
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 5.1e-105 385.6 326 62.9
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 5.1e-105 385.6 285 71.2
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 5.1e-105 385.6 335 62.7
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 6.6e-105 385.2 326 63.2
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 8.7e-105 384.8 290 69.7
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.1e-104 384.4 330 63.3
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.5e-104 384.0 335 63.0
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 7.3e-104 381.7 329 62.0
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 2.1e-103 380.2 328 61.6
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 2.8e-103 379.8 325 60.0
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 4.8e-103 379.0 343 60.1
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 4.8e-103 379.0 339 59.3
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 4.8e-103 379.0 329 59.9
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 4.8e-103 379.0 334 61.1
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.4e-102 377.5 329 61.1
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 3.1e-102 376.3 323 61.6
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 3.1e-102 376.3 288 69.1
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 4.0e-102 375.9 338 59.2
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 2.0e-101 373.6 318 62.9
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 3.4e-101 372.9 318 61.9
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 1.7e-100 370.5 312 61.5
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 8.4e-100 368.2 328 60.1
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 1.9e-99 367.1 324 60.5
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 4.2e-99 365.9 301 63.5
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 7.1e-99 365.2 334 59.6
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 1.2e-98 364.4 292 64.4
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 3.0e-97 359.8 317 60.3
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 6.9e-94 348.6 361 55.1
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.3e-92 344.4 298 59.4
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.7e-92 344.0 447 46.8
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 6.5e-92 342.0 312 58.7
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 4.2e-91 339.3 322 58.4
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 9.3e-91 338.2 294 59.5
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 6.2e-87 325.5 347 55.6
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.1e-83 314.7 336 52.4
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.3e-80 302.8 307 56.4
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 5.7e-80 302.4 304 55.6
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.8e-78 297.4 294 58.5
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.6e-74 283.1 224 68.3
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 5.0e-68 262.7 217 63.1
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 2.6e-61 240.4 331 42.6
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.3e-60 238.0 325 43.4
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 2.0e-56 224.2 219 55.3
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 1.3e-55 221.5 312 46.8
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.6e-50 203.4 136 77.9
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 1.9e-43 181.0 156 60.9
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 2.0e-40 171.0 380 32.1
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.4e-38 164.9 152 57.2
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 1.2e-37 161.8 112 76.8
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 2.0e-37 161.0 338 32.8
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 2.7e-37 160.6 161 54.0
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 7.7e-37 159.1 252 39.7
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.3e-36 158.3 153 56.9
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.2e-35 152.5 116 65.5
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 1.8e-33 147.9 181 49.2
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 1.2e-32 145.2 212 44.8
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.8e-24 116.3 71 81.7
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 1.4e-22 111.7 98 61.2
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 7.0e-22 109.4 158 43.0
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 6.0e-21 106.3 84 63.1
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.7e-20 104.8 70 80.0
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 2.3e-20 104.4 82 65.9
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.1e-19 102.1 64 79.7
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.5e-19 100.9 174 45.4
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.6e-19 99.8 78 65.4
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 9.5e-19 99.0 63 76.2
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.6e-18 98.2 154 43.5
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 4.7e-18 96.7 57 84.2
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 1.1e-17 95.5 64 73.4
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.4e-17 95.1 182 36.3
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 5.2e-17 93.2 106 52.8
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 3.4e-16 90.5 132 46.2
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 9.8e-16 89.0 67 65.7
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.4e-14 84.3 60 68.3
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 4.1e-14 83.6 338 25.4
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 1.5e-11 75.1 324 27.8
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.6e-11 73.2 86 53.5
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 6.2e-10 69.7 119 32.8
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 8.9e-09 65.9 104 44.2
HanXRQChr17g0555681 Helianthus annuus HOM05D001638 ORTHO05D225591 1.7e-07 61.6 31 96.8
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 4.9e-07 60.1 57 57.9


User provided reference genes

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