Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0428451 Helianthus annuus HOM05D001070 ORTHO05D002096 1.4e-31 139.0 72 100.0
HanXRQChr14g0428511 Helianthus annuus HOM05D001070 ORTHO05D002096 1.4e-31 139.0 72 100.0
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 1.5e-30 135.6 72 97.2
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 7.6e-30 133.3 72 95.8
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 2.2e-29 131.7 72 94.4
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 6.5e-29 130.2 69 97.1
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 6.5e-29 130.2 69 97.1
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 2.5e-28 128.3 72 93.1
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 5.5e-28 127.1 69 95.7
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 9.3e-28 126.3 66 97.0
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 2.7e-27 124.8 69 94.2
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 3.5e-27 124.4 69 89.9
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.0e-27 123.6 69 88.4
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.0e-27 123.6 69 88.4
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.0e-27 123.6 69 88.4
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.0e-27 123.6 69 88.4
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.0e-27 123.6 69 88.4
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.0e-27 123.6 69 88.4
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.0e-27 123.6 69 88.4
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.0e-27 123.6 69 88.4
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.3e-26 122.5 69 88.4
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.3e-26 122.5 69 88.4
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.8e-26 122.1 69 88.4
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 3.0e-26 121.3 69 87.0
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolC2t10590H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 87.0
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.9e-26 120.9 69 85.5
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 5.1e-26 120.6 69 85.5
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 5.1e-26 120.6 69 85.5
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 6.7e-26 120.2 69 87.0
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 1.1e-25 119.4 69 87.0
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 1.5e-25 119.0 69 84.1
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 1.5e-25 119.0 69 84.1
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 1.5e-25 119.0 69 84.1
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-25 119.0 69 84.1
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-25 119.0 69 84.1
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-25 119.0 69 84.1
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-25 119.0 69 84.1
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-25 119.0 69 84.1
Nitab4.5_0023521g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.9e-25 118.6 69 82.6
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.3e-25 117.9 69 85.5
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.3e-25 117.9 69 85.5
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.3e-25 117.9 69 85.5
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.3e-25 117.9 69 84.1
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.3e-25 117.5 69 84.1
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 5.7e-25 117.1 69 85.5
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 7.4e-25 116.7 69 85.5
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 7.4e-25 116.7 69 85.5
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 9.6e-25 116.3 69 84.1
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 1.3e-24 115.9 69 85.5
Gohir.A11G056832 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.3e-24 115.9 69 82.6
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.6e-24 115.5 68 83.8
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.8e-24 114.8 69 84.1
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.7e-24 114.4 69 82.6
HanXRQChr12g0376641 Helianthus annuus HOM05D001070 ORTHO05D002096 4.8e-24 114.0 63 93.7
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.4e-23 112.5 69 78.3
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.8e-23 112.1 69 79.7
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.4e-23 111.7 69 81.2
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.2e-22 109.4 68 77.9
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.2e-22 109.4 69 79.7
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 2.0e-22 108.6 69 81.2
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 3.4e-22 107.8 69 79.7
Lsat_1_v5_gn_6_14481 Lactuca sativa HOM05D001070 ORTHO05D002096 5.8e-22 107.1 69 78.3
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.6e-22 106.7 71 74.6
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 1.3e-21 105.9 69 79.7
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.2e-20 101.3 69 75.4
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 3.2e-20 101.3 65 78.5
Hund22091 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.2e-20 100.9 69 75.4
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 1.2e-19 99.4 69 72.5
MELO3C030628.2 Cucumis melo HOM05D001070 ORTHO05D002096 3.5e-19 97.8 64 76.6
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-18 94.7 52 96.2
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 1.5e-17 92.4 69 73.9
Solyc01g017480.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-17 92.4 62 75.8
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 7.4e-17 90.1 69 72.5
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 7.4e-17 90.1 52 88.5
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 1.6e-16 89.0 53 84.9
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 3.7e-16 87.8 69 68.1
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.4e-15 85.1 64 71.9
Nitab4.5_0004697g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.1e-15 84.7 52 82.7
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 6.9e-15 83.6 69 63.8
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 9.0e-15 83.2 49 85.7
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.2e-14 82.8 64 70.3
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.2e-14 82.8 64 70.3
MBI01_g06564_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D002096 3.4e-14 81.3 52 80.8
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 7.7e-14 80.1 52 80.8
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 1.7e-13 79.0 45 86.7
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 8.5e-13 76.6 69 60.9
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 1.4e-12 75.9 69 55.1
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 9.4e-12 73.2 42 85.7
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 9.4e-12 73.2 58 65.5
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 9.4e-12 73.2 58 65.5
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.1e-11 72.0 51 74.5
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.1e-11 72.0 69 56.5
Oeu011447.1 Olea europaea HOM05D001070 ORTHO05D002096 2.1e-11 72.0 46 76.1
Hund11512 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.1e-11 72.0 53 71.7
Oeu011446.1 Olea europaea HOM05D001070 ORTHO05D002096 7.9e-11 70.1 46 73.9
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.9e-11 70.1 70 60.0
Nitab4.5_0002691g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.3e-10 68.6 41 75.6
Hund29395 Selenicereus undatus HOM05D001070 ORTHO05D002096 6.7e-10 67.0 42 78.6
Gohir.D05G248050 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.8e-10 66.6 43 72.1
Medtr1g110440 Medicago truncatula HOM05D001070 ORTHO05D002096 5.7e-09 63.9 58 53.4
Gorai.009G258900 Gossypium raimondii HOM05D001070 ORTHO05D002096 9.7e-09 63.2 36 77.8
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 1.1e-07 59.7 51 64.7
Hund03954 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-07 59.7 56 58.9
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.1e-07 58.2 32 93.8


User provided reference genes

Program Settings